Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00861 ATGTTGACTTTTTATTTTCAGTCAGAGCTTAAGGAAGCAATCACTTCTCATCCAGAAGCAGAAGAGCAAAGTTCAGCTCGAGATGATGCATTATCTCAAGTCTTGGGAAAAGATCGACATGGCTATGTGCGCACATATGGAAAAGGGGTTGTACCTTCTGACTTATGGGGATCTAAGTCTCATGTTGAAATCCAAAATGTAATTGATGAGGTTAAAAGAAATGCTCAAATTGAACTCAAAGGTATACAAGAAAAAATGCAAGAGGAAATGGAAGTAAAGTTAAAAGAGCAAGTGGAAGCCATGAAAGTAGAACTTCTAAGCAATTTTAAAGTTTTTTTGACTCAGCTACAAGAATGTTTTCCATCAATAGTGATTCCAGATTTGTGCCATGTTCAAAATATAAAAGAGAAAGTTGTTGATACACGTTCTACTCATCATGCTTATATTAAGAAACAAAGTCATACAACTTCCAAGAGCAAATCAGGAAGAGATGAGAAAACTCACAAAAAGCAACACAATAATGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATGACCATTTGAGACAAGTTTTTGGACAGTATGGAGAGTTGGTTCACGTGAAGATTCCAGCTGGCAAAAGATGTGGATTTGTTCAATTTGCCGACAGGATCTGCGCAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCCTCAAACAAACAGGCCCAACCTGATCCAAACCAGTGGAATGGTAGCGGATATTATGGATACGCTCAAGGTTACGATAAAGGCTTTGGATGA 885 0.3921 MLTFYFQSELKEAITSHPEAEEQSSARDDALSQVLGKDRHGYVRTYGKGVVPSDLWGSKSHVEIQNVIDEVKRNAQIELKGIQEKMQEEMEVKLKEQVEAMKVELLSNFKVFLTQLQECFPSIVIPDLCHVQNIKEKVVDTRSTHHAYIKKQSHTTSKSKSGRDEKTHKKQHNNASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRICAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQGYDKGFG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00861 294 MobiDBLite consensus disorder prediction 173 198 - -
Cca02g00861 294 Gene3D - 155 294 IPR012677 -
Cca02g00861 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 264 IPR000504 GO:0003723
Cca02g00861 294 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 169 291 - -
Cca02g00861 294 Coils Coil 72 92 - -
Cca02g00861 294 MobiDBLite consensus disorder prediction 146 198 - -
Cca02g00861 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Cca02g00861 294 SMART rrm1_1 193 260 IPR000504 GO:0003723
Cca02g00861 294 SUPERFAMILY RNA-binding domain, RBD 175 289 IPR035979 GO:0003676
Cca02g00861 294 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 169 291 - -
Cca02g00861 294 MobiDBLite consensus disorder prediction 157 172 - -
Cca02g00861 294 CDD RRM3_NGR1_NAM8_like 191 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00861 Cca-Chr2 23901144 23902918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00861 194 271 Eukaryotic Initiation Factors Gene Family AT2G23350 31.325 2.11e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00861 - - aprc:113864230 239.195