Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00857 ATGGGGAGGAAGAGAAATTGGTTTTCTACGGTGAAGAAAGCTCTAAGCCCTGAGTCAAAGGAGAGGAACGATCAGAAATCAAGTAGATCAAAGAAGAAATGGTTTGGGAAGGAAAAATTGCAGACTTCAGAGTCGCCGTCAGAAACTGATAAAGCACCTCCTCTTCCTCCACCTGAGATTATTTTAACTCATGTTGAGAGTGAAACCAGCCCCGATAACATTGAAGTTGCAACTGCAGTGGACGCTGAGAGACCTGTTCCTGTTGTTGAGACAGTAGCTGCTGAGGTTCATGCCACTACAATTGTTCAGTTTGCCAGTAAACCAACGGATGAAGTGGCAGCAATCAGGATTCAAAAAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGCCTTGTCAGGTTGAGATCACTTATGGAAGGGCCAGTGGTAAAACGTCAAGCCATTAGTACCCTCCGTTCTTTGCAGACTTTTGCTCATTTGCAATCTCAGATTCGTTTGAGGAGGCTCAGGATGTTAGAGGAGAATCAAGCTCTACAAAAGCAGCTCTTACTGAAGCACACTAAAGAGCTAGAGAGCATGCGGATTGGGGAGGAATGGGATGACAGCATCCAATCAAAAGAGCAAGTTGAAGCCAAGTTACTAAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAACTCGTCAAGATCTATAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGCTGGAGCTGGTTGGAGCGTTGGACGGCAGCCCGGCCATGGGAGAGCCATAGCCTGATGGAGAAAGAGAAGAACGACAATTCATCTGTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAAGCATTTGCTAAATTTCAGCTTAATTCTGAAAAGCTTTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAGCTTTGAGTCTCATTCACATTCCCATTCAAATCCTCCCAAGCCTGCTTCTCCAGCAGTTGCTAAGAAACTGAAGAAAGTGAATCCAAAGGACATGTTGGTGATAGATGATGACACCAAAAGCATGGCAAGTGTCCAGTCAGAGCGGCCACCCCGTAGGCACTCCATTGCTGGATCAACAGTGAGAGATGATGAAAGTCTTGCAAGCTCTCCAGCAGTTCCAAGTTACATGGTGCCAACTAAATCTGCCAAAGCTAAGTCCAGGATGCAAAGTCCATCATTAGCTGCAGAAAATGGAACAACCCCAGATAAAGGATCCTCTGGGACTGCAAAGAAACGCCTTAGCTTCCCAGCTTCACCTGCCAGACCAAGGAGGCATTCAGGTCCACCAAAGGTAGAAAGCAACTTCAGTGCAGAAATCACTGTAGGCAATGGTGTGGCTGGTTGA 1431 0.464 MGRKRNWFSTVKKALSPESKERNDQKSSRSKKKWFGKEKLQTSESPSETDKAPPLPPPEIILTHVESETSPDNIEVATAVDAERPVPVVETVAAEVHATTIVQFASKPTDEVAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSLQTFAHLQSQIRLRRLRMLEENQALQKQLLLKHTKELESMRIGEEWDDSIQSKEQVEAKLLSKYEATMRRERAMAYSFSHQQNWKNSSRSINPMFMDPTNPAWGWSWLERWTAARPWESHSLMEKEKNDNSSVRSSSRGITSAEISKAFAKFQLNSEKLSPTASQNPGSPSFESHSHSHSNPPKPASPAVAKKLKKVNPKDMLVIDDDTKSMASVQSERPPRRHSIAGSTVRDDESLASSPAVPSYMVPTKSAKAKSRMQSPSLAAENGTTPDKGSSGTAKKRLSFPASPARPRRHSGPPKVESNFSAEITVGNGVAG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00857 476 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Cca02g00857 476 MobiDBLite consensus disorder prediction 316 341 - -
Cca02g00857 476 MobiDBLite consensus disorder prediction 1 57 - -
Cca02g00857 476 MobiDBLite consensus disorder prediction 15 45 - -
Cca02g00857 476 Gene3D iswi atpase 107 134 - -
Cca02g00857 476 SMART iq_5 109 131 IPR000048 GO:0005515
Cca02g00857 476 MobiDBLite consensus disorder prediction 412 436 - -
Cca02g00857 476 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Cca02g00857 476 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 471 - -
Cca02g00857 476 PANTHER IQ-DOMAIN 5-RELATED 1 471 - -
Cca02g00857 476 MobiDBLite consensus disorder prediction 316 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00857 Cca-Chr2 23824618 23828693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00857 1 475 IQD Protein Family AT5G03040 51.329 1.67e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00857 - - gmx:100801847 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00857 02 23824618 23828693 Cca02g00857 02 23824618 23828693 ECH
Cca03g02348 03 44457326 44461833 Cca02g00857 02 23824618 23828693 PCT