Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00850 ATGGCCGACGATTTCGATTTCGCCGACAAAGTCCCTCCTTCCTTCGATCGCGTGGGAAATGCTTCAAAAGGGTTCAACCCAGCATTAATTGTTCTCCTTCTTGTTGGTGGGTTGCTGTTGATATTCCTCGTTGGAAATTATGTACTCTACATATATGCACAGAAGACCCTCCCTCCAAGAAAAAAGAAGCCAATCTCAAAGAAGAAGATGAAAAAGGAGAGACTGAAGCAGGGTGTCTCGGCACCTGGAGAGTAG 255 0.4588 MADDFDFADKVPPSFDRVGNASKGFNPALIVLLLVGGLLLIFLVGNYVLYIYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00850 84 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 3 84 - -
Cca02g00850 84 PANTHER DNA-BINDING PROTEIN S1FA2 3 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cca02g00850 84 MobiDBLite consensus disorder prediction 59 84 - -
Cca02g00850 84 Pfam DNA binding protein S1FA 21 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cca02g00850 84 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00850 Cca-Chr2 23698924 23701750 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Cca02g00850 S1FA 5.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00850 - - gmx:100500343 135.576