Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00847 ATGGGGCATAGACATTTATATAGCTCATCTGCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGCACCTTGGTAGGACTACCACGTCAGATAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCGTTGATAGCATTTCTTTTCCACCTCATTGGAACACTGCACCAAGGTCAAATGGATATGCATCCACAAGTCTCAACATTGAAGCACCTCCTCATCAAACAGATGCATCAGGCACTTCTCATGATCATTTTCCGCATTCATCAAGTGCTGGAATATTTTATGCAGTGTCTGAAAACTATGTACACCAGCCATCTAATTCCAATTATGACAGACAAGCATTTTCTGTTGCTGATGGTGGTTTTATTGATCTTACAATGGGAAACGGACGAGGGCCTCACAAACGTAAGAGCCCTGGAATTCCTTCAGTCTGTGAGAGAGGAAGTACAAGCAGATACTTTAATGCTGGAAATGCAGCTGATCATCCTACATCTTCTGAATTGCGGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTTAGTATGACACCCACATTTAGAGGTAGAGGCCTATCAATACGGGGTGAGGGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTAGAATCCAACATGGCTAGGACCCATTTATCATGTACTCATTCTCACAACTCATACTCTACTGGTCCACCAATTGACCATTCTAGCATGGTTGATCCTTCAATTCAAACTTCTGGAACTTTGACAAGGGATTGGAGCCAAATGAGCATGTGTCCTGCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCATGAGGCAAGTCATTTCCCCATTGGAAGTGGTTCTAGTAATGCTCCTATAGATGTTGGAGGTTTTCATAATGAATTTGGAACGAGCAGAATTCCTACTGCTCCTCAAAGTTTTCAAAATAATCCGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAGGCTTGCGCTTGGGTCGTGTGGCACCTTCTGATGATGGATTGCATATGGTTGCTGAAAGTTACCCTTCTAGACATCCAAGGCCATTGACCACCATTGGTTGGCAGAACAATGATAGAAATGGAAGGTCAAGGATACCTAATGATAGATATAGATCATTGGCTGATGAGGTTGGTCTCAGTGATCGATTTAACTCTGAGGGTTTCATGATTGTTGATCGTACTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGATCTACTTGCACTTGGAGAGAGAATTGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGAGAGAAACAATATACTGTTCGTCTGAGCCAAGTCAAGAAGAAGGAACTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGATGATGTTGGGACGCTGAAAACTTGTGGACATGATTACCATGTGGGTTGCGTTAAAAAGTGGTTGTCTATGAAGAAAGTATGTCCCATCTGCAAAGCTTCTGCGATGCCCGAGGACACAAAGGATAAATAA 1650 0.4206 MGHRHLYSSSAMFEGEPDQNWNHMHTDQQYVHLGRTTTSDNGSFIYPLENMSVDSISFPPHWNTAPRSNGYASTSLNIEAPPHQTDASGTSHDHFPHSSSAGIFYAVSENYVHQPSNSNYDRQAFSVADGGFIDLTMGNGRGPHKRKSPGIPSVCERGSTSRYFNAGNAADHPTSSELRPEKPNMDSLYMPWDHVSMTPTFRGRGLSIRGEGSLRNVRSRSALDLESNMARTHLSCTHSHNSYSTGPPIDHSSMVDPSIQTSGTLTRDWSQMSMCPAHGRVSSSDANAFNHEASHFPIGSGSSNAPIDVGGFHNEFGTSRIPTAPQSFQNNPTQTARGVRSNYSQRSTPTFRASSGLRLGRVAPSDDGLHMVAESYPSRHPRPLTTIGWQNNDRNGRSRIPNDRYRSLADEVGLSDRFNSEGFMIVDRTSLYGSRNMLDQHRDMRMDIDNMSYEDLLALGERIGHVSTGLSEDLISKYLRETIYCSSEPSQEEGTCAICLEEYKNMDDVGTLKTCGHDYHVGCVKKWLSMKKVCPICKASAMPEDTKDK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00847 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Cca02g00847 549 SUPERFAMILY RING/U-box 486 542 - -
Cca02g00847 549 SMART ring_2 496 537 IPR001841 -
Cca02g00847 549 MobiDBLite consensus disorder prediction 69 95 - -
Cca02g00847 549 Pfam Ring finger domain 495 538 IPR001841 -
Cca02g00847 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 543 IPR013083 -
Cca02g00847 549 MobiDBLite consensus disorder prediction 322 354 - -
Cca02g00847 549 CDD RING-H2_PA-TM-RING 495 538 - -
Cca02g00847 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Cca02g00847 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00847 Cca-Chr2 23615227 23617668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00847 1 548 C3H Transcription Factor Family AT2G37150 41.906 7.05e-114 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00847 - - gmx:100786013 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00847 02 23615227 23617668 Cca02g00847 02 23615227 23617668 ECH
Cca03g02358 03 44553222 44555550 Cca02g00847 02 23615227 23617668 PCT