Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00843 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGCCTTCAATCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCCCCCTCCCAAGAAGAAGAGAAACCTTCCAGGCACACCAGATCCAGATGCCGAGGTCATCGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGTTTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTCCACCGAAGGGGTCACAACCTTCCGTGGAAGCTACGCCAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCTGAACAAACCTGCGTCCACCACGACCCTTCAAGGGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCACACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACTCATAGAGCATTTTGCGATGCTTTGGCTGAAGAGAGTGCGAGGCTCACCTCAGTTACCACAACAAATCTAAATTTCAAGAGTGAAGAGGGCAGTAATGTGATGAACTCGCAGCACGGTTTGGGGCATGGTTTAATTGCAGCGCAGGGTCTTCAAAACGTAGGTGGCATTCCTCAATTTGGTCCACATGGTTTTCGTTTGGATTTTAATGGAATGGAGCAACAACAAAGGCCAAGTTTGTCACTATGGTTGAACCAGGGGAATCCCCATATGAATAACAATAATAATATTAGTAACAACGGTGCTCCCGATGTGGGGCCCAATTACATGTCATCATGCTCTTCAGGGTTGCCTGAGATTGTGCAAATGGCTCAGGCCAATGCCTTGATGGGTTCATCATCGATGGTGTCCAATTTTGGAGTGCCTGTGGGTTCTAATTCAACCAGTGCTGCAAATCTTTCTCTTTCGTCACTACCTATTGGGAAAAGAGGAGAAACAGTGGTGGACTTGGCGACTATTTATAATTGTGAGGGTCAAAACAAGCAATCAAAGCCTGCTTCACCCATGTCAGCCACTGCGCTTCTGCAGAAAGCAGCTCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGCGGTGAACTCACCTTCCTCGCAAACTACCACTCTCAATAACAACAACGCCGTGATGCTGGGAAGCAATAATAATGCAGCTGCTACTACTGCTGGAACTGACTATAGCTCTTTGACGCATTCATCAAACAGTTTTGACCAACTCGTGATGCAGACCAATGGGCAGTTACAAAGCGAGCCAGTGAAACTGAAGCTTCATTCTAACGCCGTGGAGCATAATTTGACAAGGGATTTTCTCGGCGTGAGTGGAGGAGGAGGAGGAGCTGGCCCTCAGTTCCTACCCCAAGAACTTGCGAAGTTTGCTTCCATGGGCTCGCCAATGGGGTTGAGCCAATTCACGAGTAACCAATGA 1548 0.4826 MQMMPGDPFSLSTSIGAFNQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGSNVMNSQHGLGHGLIAAQGLQNVGGIPQFGPHGFRLDFNGMEQQQRPSLSLWLNQGNPHMNNNNNISNNGAPDVGPNYMSSCSSGLPEIVQMAQANALMGSSSMVSNFGVPVGSNSTSAANLSLSSLPIGKRGETVVDLATIYNCEGQNKQSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGAVNSPSSQTTTLNNNNAVMLGSNNNAAATTAGTDYSSLTHSSNSFDQLVMQTNGQLQSEPVKLKLHSNAVEHNLTRDFLGVSGGGGGAGPQFLPQELAKFASMGSPMGLSQFTSNQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00843 515 PANTHER ZINC FINGER PROTEIN JACKDAW 7 503 IPR033243 GO:0003700
Cca02g00843 515 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g00843 515 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Cca02g00843 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 503 - -
Cca02g00843 515 SMART c2h2final6 64 86 IPR013087 -
Cca02g00843 515 SMART c2h2final6 140 160 IPR013087 -
Cca02g00843 515 SMART c2h2final6 105 135 IPR013087 -
Cca02g00843 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Cca02g00843 515 MobiDBLite consensus disorder prediction 1 48 - -
Cca02g00843 515 Gene3D Classic Zinc Finger 42 116 - -
Cca02g00843 515 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Cca02g00843 515 Gene3D Classic Zinc Finger 117 197 - -
Cca02g00843 515 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00843 Cca-Chr2 23536449 23539587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00843 1 257 IDZ Gene Family AT5G03150 65.385 1.80e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00843 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00843 K25870 - gmx:100801182 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00843 02 23536449 23539587 Cca02g00843 02 23536449 23539587 ECH
Cca03g02362 03 44610761 44613196 Cca02g00843 02 23536449 23539587 PCT