Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00841 ATGGCAACTGAACCTCAAGACTCTTCCAAGGGTCACAGTGGCCAAGGCCATGCCACCACTCAAAATAGAGATGATGTCCCAATTCAAAAGGGTCCAGCATCATCTGAAATAATAGAGGAACTCCCAAGTGGACAACATGGGACAAGGCAAAACCTTATTTTGGAGATACCTACAATAGCTCAGGAGGAAACAAGAGAAGACTACGTGAGAATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATCTTTTCCCCCTGTCCAAGTCCAGTTTTCCCCAGAAGCAAAGAATCCCCAGGTCCCTCCACATCGAAAAATAGAACAAATATTAAAACCTTTCTTCCTAAACTCAGTGTTAAATTTCGCAACACAAGTTCAGAGATTGAAAAGGCTGCCTTCCTAGCACTTGAAGGAGCAGCCATAGCAGCACCGAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACTCCAATTGCTCATTCAAATCCAGGGTCCGTACATGGAGGAAACATGGTTTACACAGCAACAGATGTTGAGAAAGATCTGAAATTACCAATTCATCGTTCCCGTTCAGTACCTGTGCTTAACAAAGAAGGTAACTCACCTGTACGTGGCATGTTTCGTATAGTTCCTACCGCACCACGAGTGGATGAGAAAATTGCCACAACACCAGTGACATCACCTATTCATGACACTGTTGAAAATGAGGATGGTGGTGAGGATATTCCCGAAGAAGAAGCTGTTTGTAGAATTTGTCTGGTTGAACTGGGAGAAGGTGCTGATACTTTTAAATTGGAGTGCAGCTGCAAAGGGGAGCTTTCATTGGCACACAAAGAATGTGCAATCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCGGAACATTCTTGGGGGCGGAGGTCAACAAGCTGATTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCTAATATGGGATCTGGTGCTATTGCCATGTCTCTGCCATTTTCTTGTATATTGGGTCTTCTAGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTCGCTGGACATCTTTTCTTCTCATTGGTAAGAAATTGTTTTTTGTAA 1290 0.4264 MATEPQDSSKGHSGQGHATTQNRDDVPIQKGPASSEIIEELPSGQHGTRQNLILEIPTIAQEETREDYVRINMPLTPPPRRVIFSPCPSPVFPRSKESPGPSTSKNRTNIKTFLPKLSVKFRNTSSEIEKAAFLALEGAAIAAPKKPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNMVYTATDVEKDLKLPIHRSRSVPVLNKEGNSPVRGMFRIVPTAPRVDEKIATTPVTSPIHDTVENEDGGEDIPEEEAVCRICLVELGEGADTFKLECSCKGELSLAHKECAIKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGRNILGGGGQQADSQYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWVYATVQFCLVVLAGHLFFSLVRNCFL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00841 429 MobiDBLite consensus disorder prediction 1 46 - -
Cca02g00841 429 CDD RING_CH-C4HC3_MARCH 262 310 - -
Cca02g00841 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
Cca02g00841 429 SMART ringv_2 261 310 IPR011016 GO:0008270
Cca02g00841 429 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Cca02g00841 429 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 425 - -
Cca02g00841 429 SUPERFAMILY RING/U-box 258 313 - -
Cca02g00841 429 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g00841 429 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Cca02g00841 429 PANTHER OS02G0165000 PROTEIN 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00841 Cca-Chr2 23468058 23473289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00841 259 361 C3H Transcription Factor Family AT2G37950 34.783 1.75e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00841 - - gmx:100787963 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00841 02 23468058 23473289 Cca02g00841 02 23468058 23473289 ECH