Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00839 ATGGGTAACATTGGAAGCAGCGGCTCCAACAGCCGTCGGAGACAcggcggcggcggcggaagcgggaggcggATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTCCGCCTCAGCCGGTGATTCCGCCGCCGGAGGTCACGGCGAACAGATTCGTCTATCCTCCCGCCGCCACACCGTATCACAACTACCCCGGCTACTATCCGCCGCCGACAACCATGCCAGCGCCGTTGCCGGCACCGTACGACCACCACCACCGTCAGGCGGTGGAGCCGATTTGGGGGCGGTACCCGCCGGCGCCGGCACCGGCACCGGCGCCCTACGTGGAACACCAGAAGGCGGTTACCATAAAGAACGATGTCAACATTAAGAAGGAGACGCTTAGGATTGAGCCTGATGAAGAGAATCCTGGCCGTTTCCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAATCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCAATACTTGAGGAGTCTGAGTTATTGAAAGCGGGGGACATGGATGTCTATCCTGTTGCCATTAAAGCTGATGCATCCTCTGGTGATCATGATGGATCAAATGAAACTCCAACATCTGGCAACAACACAAACTCTCAGATAACTCAAGCAGTGTTCGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTACAGGAGATATATGGTATTGGAAATTCTGTGGAAAGTGACTTGGATGGGAATGACCCTGGAAAAGAGTGCGTTATTTGCTTGTCAGAGCCTCGAGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTGGAGAGGCTTTTGGAGATCAAAGTtgggcctgagccagagcctgagcctcagcccgagGAGTGA 1113 0.4564 MGNIGSSGSNSRRRHGGGGGSGRRIXXXXXXXXXXXXXXXXPPPPQPVIPPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRQAVEPIWGRYPPAPAPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGRFLVSFTFDATVSGSITIFFFAKEGEGCTLIPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSILEESELLKAGDMDVYPVAIKADASSGDHDGSNETPTSGNNTNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEPQPEE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00839 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 357 IPR013083 -
Cca02g00839 370 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0061630
Cca02g00839 370 Pfam Zinc finger, C3HC4 type (RING finger) 306 352 - -
Cca02g00839 370 SUPERFAMILY RING/U-box 307 353 - -
Cca02g00839 370 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 307 347 IPR045195 -
Cca02g00839 370 MobiDBLite consensus disorder prediction 238 254 - -
Cca02g00839 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 363 - -
Cca02g00839 370 MobiDBLite consensus disorder prediction 1 55 - -
Cca02g00839 370 ProSiteProfiles Zinc finger RING-type profile. 308 347 IPR001841 -
Cca02g00839 370 SMART ring_2 308 346 IPR001841 -
Cca02g00839 370 MobiDBLite consensus disorder prediction 232 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00839 Cca-Chr2 23437878 23442349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00839 102 327 C3H Transcription Factor Family AT3G09770 66.239 2.32e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00839 - - gmx:100789032 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00839 02 23437878 23442349 Cca02g00839 02 23437878 23442349 ECH
Cca03g02369 03 44668960 44672938 Cca02g00839 02 23437878 23442349 PCT