Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g00838 | ATGAAGATTCCTTGTTCTCTTTTCTCTTGTTTCTCTTCATCCACCTACGAACAAAACAACAACTACGAGTACCCTGATGGAGAGAACAACGATGGCAGCTTTGGTTTGTTCACTTACAACCAATTGAAATTAGCCACTCGTAATTTTCATTCCTCGGAAAAAATTGGAGAAGGTGGCTTTGGCTCTGTCTATAAGGGGAGGCTCGTGGATGGTTCTTTTGTGGCGGTGAAAGTGCTCTCTGTTGAGGTAGAATCCATGCGAGGAGAGAGAGAATTTGTGGTAGAATTGGCTACACTAGCGAATATCAGGCACCAAAATCTTGTAAGCCTACGAGGGTGTTGTGTGGAAGGTGTTCATAGATATCTAGTCTACGAGTATATGGAGAACAACAGCCTCTACAACACTTTCTTAGGTTCGGAGGAGAGAAGAACGAGATTCATGTGGGAAACAAGGAGGGAAATTTCCATAGGTGTGGCTCGTGCCCTTGTTTTTCTCCATGAGGAGCTTAAGCCTCATATCGTACATAGAGACATCAAGGCCAAAAATATCCTTCTTGATCGGAATTTCACACCAAAGGTTTCAGATTTTGGTTTGGCAAAATTGCTGAGAGATGAAGCATCTCACGTCAGCACTCGGGTTGCAGGGACATTGGGTTATTTAGCTCCGGAGTATGCCAATTCTGGACAGGTTTCACGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTCTTACAAATTGTGAGTGGCCTAGCAGTAGTGGATGCCTATCAAGACATGGAACGTTTCATCGTGGAGAAGGCGTGGACAGCGTACCAAGCTAACGATTTATTAAAATTGGTGGATCCTGTGCTAAACATGAATTTTCCAGAGGAAGAGGGCATGAAATTCCTGAAGGTGGGGCTACTTTGCGTGCAAGAAACAGCCAAGCTTCGGCCACGAATGACAGAGGTTGTAGACAAGTTGACCAACGACGTTAACATGAGAGACGTTCACATTTCAAAGCCAGGTTTCGTGGCTGACCTCAGGAACATCAGAATCAAACAACAAAGTTCGTCCCAGGAAACAAGTTCCCCTGGAGCAACCTTTGCAAGCTCCATTTGGAGTTCCGCCAACCTTGCTCGTTAG | 1125 | 0.448 | MKIPCSLFSCFSSSTYEQNNNYEYPDGENNDGSFGLFTYNQLKLATRNFHSSEKIGEGGFGSVYKGRLVDGSFVAVKVLSVEVESMRGEREFVVELATLANIRHQNLVSLRGCCVEGVHRYLVYEYMENNSLYNTFLGSEERRTRFMWETRREISIGVARALVFLHEELKPHIVHRDIKAKNILLDRNFTPKVSDFGLAKLLRDEASHVSTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDMERFIVEKAWTAYQANDLLKLVDPVLNMNFPEEEGMKFLKVGLLCVQETAKLRPRMTEVVDKLTNDVNMRDVHISKPGFVADLRNIRIKQQSSSQETSSPGATFASSIWSSANLAR | 374 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g00838 | 374 | CDD | STKc_IRAK | 55 | 323 | - | - | |
Cca02g00838 | 374 | SMART | serkin_6 | 49 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g00838 | 374 | ProSiteProfiles | Protein kinase domain profile. | 49 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g00838 | 374 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 9 | 348 | - | - | |
Cca02g00838 | 374 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 173 | 185 | IPR008271 | GO:0004672|GO:0006468 | |
Cca02g00838 | 374 | Pfam | Protein kinase domain | 49 | 318 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g00838 | 374 | ProSitePatterns | Protein kinases ATP-binding region signature. | 55 | 77 | IPR017441 | GO:0005524 | |
Cca02g00838 | 374 | Gene3D | Transferase(Phosphotransferase) domain 1 | 127 | 334 | - | - | |
Cca02g00838 | 374 | PANTHER | RECEPTOR-LIKE KINASE | 9 | 348 | - | - | |
Cca02g00838 | 374 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 126 | - | - | |
Cca02g00838 | 374 | SUPERFAMILY | Protein kinase-like (PK-like) | 31 | 340 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g00838 | Cca-Chr2 | 23413945 | 23416167 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g00838 | 35 | 363 | Receptor kinase-like Gene Family | AT1G53430 | 46.386 | 2.07e-92 | 296 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Cca02g00838 | Pkinase | 3.1e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g00838 | - | - | gmx:100813945 | 640.958 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g00838 | 02 | 23413945 | 23416167 | Cca02g00838 | 02 | 23413945 | 23416167 | ECH | |
Cca03g02370 | 03 | 44677854 | 44680205 | Cca02g00838 | 02 | 23413945 | 23416167 | PCT |