Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00838 ATGAAGATTCCTTGTTCTCTTTTCTCTTGTTTCTCTTCATCCACCTACGAACAAAACAACAACTACGAGTACCCTGATGGAGAGAACAACGATGGCAGCTTTGGTTTGTTCACTTACAACCAATTGAAATTAGCCACTCGTAATTTTCATTCCTCGGAAAAAATTGGAGAAGGTGGCTTTGGCTCTGTCTATAAGGGGAGGCTCGTGGATGGTTCTTTTGTGGCGGTGAAAGTGCTCTCTGTTGAGGTAGAATCCATGCGAGGAGAGAGAGAATTTGTGGTAGAATTGGCTACACTAGCGAATATCAGGCACCAAAATCTTGTAAGCCTACGAGGGTGTTGTGTGGAAGGTGTTCATAGATATCTAGTCTACGAGTATATGGAGAACAACAGCCTCTACAACACTTTCTTAGGTTCGGAGGAGAGAAGAACGAGATTCATGTGGGAAACAAGGAGGGAAATTTCCATAGGTGTGGCTCGTGCCCTTGTTTTTCTCCATGAGGAGCTTAAGCCTCATATCGTACATAGAGACATCAAGGCCAAAAATATCCTTCTTGATCGGAATTTCACACCAAAGGTTTCAGATTTTGGTTTGGCAAAATTGCTGAGAGATGAAGCATCTCACGTCAGCACTCGGGTTGCAGGGACATTGGGTTATTTAGCTCCGGAGTATGCCAATTCTGGACAGGTTTCACGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTCTTACAAATTGTGAGTGGCCTAGCAGTAGTGGATGCCTATCAAGACATGGAACGTTTCATCGTGGAGAAGGCGTGGACAGCGTACCAAGCTAACGATTTATTAAAATTGGTGGATCCTGTGCTAAACATGAATTTTCCAGAGGAAGAGGGCATGAAATTCCTGAAGGTGGGGCTACTTTGCGTGCAAGAAACAGCCAAGCTTCGGCCACGAATGACAGAGGTTGTAGACAAGTTGACCAACGACGTTAACATGAGAGACGTTCACATTTCAAAGCCAGGTTTCGTGGCTGACCTCAGGAACATCAGAATCAAACAACAAAGTTCGTCCCAGGAAACAAGTTCCCCTGGAGCAACCTTTGCAAGCTCCATTTGGAGTTCCGCCAACCTTGCTCGTTAG 1125 0.448 MKIPCSLFSCFSSSTYEQNNNYEYPDGENNDGSFGLFTYNQLKLATRNFHSSEKIGEGGFGSVYKGRLVDGSFVAVKVLSVEVESMRGEREFVVELATLANIRHQNLVSLRGCCVEGVHRYLVYEYMENNSLYNTFLGSEERRTRFMWETRREISIGVARALVFLHEELKPHIVHRDIKAKNILLDRNFTPKVSDFGLAKLLRDEASHVSTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDMERFIVEKAWTAYQANDLLKLVDPVLNMNFPEEEGMKFLKVGLLCVQETAKLRPRMTEVVDKLTNDVNMRDVHISKPGFVADLRNIRIKQQSSSQETSSPGATFASSIWSSANLAR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00838 374 CDD STKc_IRAK 55 323 - -
Cca02g00838 374 SMART serkin_6 49 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00838 374 ProSiteProfiles Protein kinase domain profile. 49 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00838 374 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 348 - -
Cca02g00838 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cca02g00838 374 Pfam Protein kinase domain 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00838 374 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Cca02g00838 374 Gene3D Transferase(Phosphotransferase) domain 1 127 334 - -
Cca02g00838 374 PANTHER RECEPTOR-LIKE KINASE 9 348 - -
Cca02g00838 374 Gene3D Phosphorylase Kinase; domain 1 12 126 - -
Cca02g00838 374 SUPERFAMILY Protein kinase-like (PK-like) 31 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00838 Cca-Chr2 23413945 23416167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00838 35 363 Receptor kinase-like Gene Family AT1G53430 46.386 2.07e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca02g00838 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00838 - - gmx:100813945 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00838 02 23413945 23416167 Cca02g00838 02 23413945 23416167 ECH
Cca03g02370 03 44677854 44680205 Cca02g00838 02 23413945 23416167 PCT