Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00837 ATGCAATCGCAAACTCTCTCACTCTTTTCATTTCTCATGTTCCTCTGCGCCGCGGTGCACGGCTTCGGTGCCATGGGCCCAATCTCCGCCTCCTTCGGGGACAGCCAGGTTTTCTGCGCCATCGACGCCAGCGGCAAGCAAGACGTCATATGTTGGGGGAACAACGCCACCTCGCCGTCGTTATCCGCCGTCTCCGCCGCCCTCCCCGCCATGGCAGCGCTCTCCGGCGGGGACGGCTTTCTCTGCGGGATTTTGGCCAACACCTCGCAGCCTTATTGCTGGGGCGCTACCACGAAACCCAGCGCAGATCTTGTTCTCGTGCCGCCGGCGTACCGGAACACCGCCTACTCCCGCATCGCCGCCGGAAACCGCCACGTGTGCGCCGTCCAGGGGTACTACTACGCCGATCGCGATTCCGGCGCCGTGGATTGCTGGGAAATCAGGAAAACCGAAAACGGCACGTTAGAGGCGATGCATAGTGACTTGTTTTTGGACCTGTCAGTGACGAAGCTTGAAGTGAAGACGGTTGTTTCCGGCGAGGGGTTCACCTGCGGTGAAGTCAAAGATAGTGGACTTACCTGTTGGGGACCCACTTCGAGGAATTTGGGTGTTTCAAATGTTTCCAATGGTTTCGCGGCCTTGGCGGCGAGTCGGAGCGCCGTGTGCGGCGTTTTCAACTTTTCCGGCGAGTTGAAGTGCTGGGGCGACCCGGGTTCGTTTTTGGATCCTCCGGTTCAGGTTCCGTTGGTTTCTCTATCGGCTGGGGCTAGGCACTTTTGTGGAGTTAGAATGGATAGCCACGAAGTGGAGTGTTGGGGTGATTTGAATTCCTCGGTGGTTCCGAAAGGAAATGGTTTCATGGCTATTGCTTCTTCGGATTTCACCACGTGCGGGATCAGGGAGGATGATCTTCTGTTGGATTGTTGGTTGGTGAATGCTTCAAAACCTGATTTTGATCCTCCTTTGGAGCTTTCTAGTCCTGGTTTGTGCAGGGCTAGTTCTTGTGGGGCTGGTGAGTTTGCTTTCAATGTGAGTGTGCTTAACGAGATTGCTTTGACGAGCCTTTGTGTTCGAGAGGATTTGAGGATTTGTTCGCCTTGTGGGTCGAATTGTTCCAAAGGGTTTTTCTTGTCTAGTGAATGTACTAGGAATGCTGATAGAGTTTGCACTGCTTGTTCTCTTTGTCAGAACAGCTCTTGTTTTGGTGTTTGTGGACTTAACAAGTCAACGGGGTTGCATATGCGTTGGCATTGGCATCATTTGCCTAGATTGGTGGTGATAGTTGGGTCTTCAGTGTTGGGGGTTTCGGTTATTTTGCTTTGTGGGTGTCTTTGTATGGTTAGAAAGGGGACACAGAAGCAATCCAAGTCTTGCATGGGGAATCCGGAGCAGGAGGATGATCATGCCAATGTTGCTCTTAACTCTACTCCTTCTGTTGCTTCTTGTCCCGGGGCGCCTCAAGTTTTCAGGCTTTCTGAACTGAAGGATGCTACTAATGGATTTAAGGAGTTCAACGAGCTTGGGAGAGGGAGTTATGGGTTTGTGTACAAGGCTTTGTTGGCTGATGGGAGAGTTGTTGCTGTGAAAAGAGCCAACGCTGCTACTATTATCCACACCAACAACCGCGATTTCGAAACGGAGCTGGAAATTCTCTGCAAAATTCGCCACTGTAATGTTGTTAACTTGTTGGGGTATTGTGCTGAGATGGGGGAGAGGTTGCTTGTTTATGAGTACATGCCTCATGGGACGCTCTATGATCACCTCCATGGTGGCCTTTCGCCGCTTAATTGGAGCCTAAGGCTGAAGATTGCGCTGCAGGCTGCAAAGGGTCTTGAGTACCTTCACAAGGAACTGGTGCCTCCTATTGTGCACAAGGATCTCAAGAGTTCAAACATTCTTTTGGATTCTGAGTGGGGAGCAAGAATTTCTGACTTTGGACTACTTGCTTCTAGTGACAAAGACCTCAATGGGGACCTAGAAAGCGATGTTTACAATTTTGGGATTGTGTTGCTAGAGATTCTGAGTGGGAGGAAGGCTTATGATAGGGATTATACTCCACCCAACATGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAGGGTGCTGCTACAATTGATAGGTACGTGTCTCTTCCGAGAAATGTTGAACCTTTGCTTAAGCTTGCGGATATAGCAGAGCTTGCTGTGAGAGAGAATCCAAGTGAGCGTCCACCTATGTCAGATATTGCATCTTGGTTGGAGCAAATTGTGAAGGATGGTTTGATCTTATAG 2274 0.5057 MQSQTLSLFSFLMFLCAAVHGFGAMGPISASFGDSQVFCAIDASGKQDVICWGNNATSPSLSAVSAALPAMAALSGGDGFLCGILANTSQPYCWGATTKPSADLVLVPPAYRNTAYSRIAAGNRHVCAVQGYYYADRDSGAVDCWEIRKTENGTLEAMHSDLFLDLSVTKLEVKTVVSGEGFTCGEVKDSGLTCWGPTSRNLGVSNVSNGFAALAASRSAVCGVFNFSGELKCWGDPGSFLDPPVQVPLVSLSAGARHFCGVRMDSHEVECWGDLNSSVVPKGNGFMAIASSDFTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRASSCGAGEFAFNVSVLNEIALTSLCVREDLRICSPCGSNCSKGFFLSSECTRNADRVCTACSLCQNSSCFGVCGLNKSTGLHMRWHWHHLPRLVVIVGSSVLGVSVILLCGCLCMVRKGTQKQSKSCMGNPEQEDDHANVALNSTPSVASCPGAPQVFRLSELKDATNGFKEFNELGRGSYGFVYKALLADGRVVAVKRANAATIIHTNNRDFETELEILCKIRHCNVVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIALQAAKGLEYLHKELVPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKDLNGDLESDVYNFGIVLLEILSGRKAYDRDYTPPNMVEWAVPLIKQGKGAATIDRYVSLPRNVEPLLKLADIAELAVRENPSERPPMSDIASWLEQIVKDGLIL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00837 757 SMART serkin_6 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00837 757 Gene3D - 162 347 IPR009091 -
Cca02g00837 757 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Cca02g00837 757 Pfam Protein tyrosine and serine/threonine kinase 505 651 IPR001245 GO:0004672|GO:0006468
Cca02g00837 757 Gene3D Phosphorylase Kinase; domain 1 465 578 - -
Cca02g00837 757 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 25 755 - -
Cca02g00837 757 Gene3D - 17 161 IPR009091 -
Cca02g00837 757 PANTHER OS01G0750732 PROTEIN 25 755 - -
Cca02g00837 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cca02g00837 757 Gene3D Transferase(Phosphotransferase) domain 1 656 754 - -
Cca02g00837 757 Gene3D Transferase(Phosphotransferase) domain 1 579 655 - -
Cca02g00837 757 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 334 389 IPR001368 GO:0005515
Cca02g00837 757 SUPERFAMILY Protein kinase-like (PK-like) 478 748 IPR011009 -
Cca02g00837 757 ProSiteProfiles Protein kinase domain profile. 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00837 757 SUPERFAMILY RCC1/BLIP-II 28 276 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00837 Cca-Chr2 23330412 23333393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00837 6 749 Receptor kinase-like Gene Family AT3G59420 31.768 1.49e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca02g00837 PK_Tyr_Ser-Thr 2.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00837 - - gmx:100802259 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00837 02 23330412 23333393 Cca02g00837 02 23330412 23333393 ECH