Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00830 ATGATTACATTCATGGACACAAAAGAGAAATCAAAGGAGGTGGAGAGGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGTATGGTGCAGATGCCTGCAGTGAACACTAAGGTGTATTACTTCCCTCAGGGGCATGCTGAGCATGCATGTGCACCAGTTAACTTCAGGTCTTGCCCTAAGGTTCCACCTTTCGTTCCATGCAGAGTGGCTGCAATCAAATACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTCAGGCTTGTTCCTCTGAATGCCACTGAGGCTGATTATGACCGTGATGTTGTTGGGGCTGAAACCCAGGACAAGCCTGCTTCATTTGCAAAGACCTTGACCCAGTCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTCCCCCGGTTGGACTACTCGATCGAGCCTCCGGTTCAGACCATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAATTCAGACACATCTATAGGGGCACGCCGCGGCGGCACCTGTTGACCACTGGGTGGAGTACTTTTGTGAATCACAAAAAGCTTGTTGCAGGGGACTCAATTGTGTTCTTGAGGGCCGAAAATGGAGATCTTTGTGTCGGGATCCGGCGAGCAAAGAAGGGGATTGGTGGAGGACCTGAGGCTCCCTCAGGGTGGAACCCTGCTGGTGGAAATTGTCCTGTGCCCTATGGTGGATTTTCAGCGTTTCTGAGGGAAGATGATAACAGAATTCTGAGGAATGGTAACAGCAATGGGTTGAACCCAAGTGTGAGTATGATAGGCAGGGGAAAAGTGAGGCCAGAAGCGGTTATTGAAGCTGCAAATCTTGCAGCCAATAAGCAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACACCGGAGTTTTGTGTGAAGGCTTCACTAGTTGAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACGGAGGACTCCTCGCGTATTAGTTGGTTTATGGGAACGATATCTTCAGTTCAGGTTGCTGATCCCCTTAATTGGCCTAATTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCATGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATCTTTCTCCTTTCTCACCACCCCGGAAGAAATTGAGATTGCCTCAACACCCGGACTTCCCGCTTGATGGCCAGATTCCTTTGCCAACATTTCCCGGCAACCTTCTAGGTCCCAGCAACACCAACCAGTTTGGATGTTTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTACGGTATATCCTTATCGGATCTCCACCTCAATAAACTGCAGTCAGGTCTATTTCCGGCTGGTTTCCCGCCCCTTGATCATGCTGCTACACCAATGAGGGTCTCAAACAACCCAACATTGCCAAAGCCCAGCATGAGTGAGAACGTCTCTTGCTTACTATCTATGGCAAATTCTACTCAGTCTCCAAAGAAATTGGATGATGGGAAGACACCCCATCTCATGCTTTTCGGCCAAAAAATTCTCACCGAGCAGCAGATCTCTCTAAGCAGCTCTGGCGATACACTCTCCCCAGTTCTTACCAGAAATTGTTCATCAGATGGAAATGCTGATAAAGTGGCTAATTTTTCCGATGGTTCTGGATCAGCTCTTCATCACCAAGGCCAACACGAACGCTCCTCTTGCGAGAGGTTCCAGTGGTATAGGGATAACCACCAAGAAAGCGAGGCCAACTTGGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTTTCGTTGCTTCAGTCTTATGATGATCTAAACAGAAAGCTGGCAGACATGTTTAGCATAGAGAAGTCTCAGATGTTGAGTCAGGTACTATACCGCGATAAAACTGGAGCAGTCAAACACATTGGTGACGAACCATTCAGTGACTTCACAAGAACAGCAAGGAGGCTGACTATTCTAATGGATTCTGGCAGCAATAATGTAGGAGTGTAG 2100 0.4824 MITFMDTKEKSKEVERCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACAPVNFRSCPKVPPFVPCRVAAIKYMADPETDEVYAKLRLVPLNATEADYDRDVVGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSIEPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEAPSGWNPAGGNCPVPYGGFSAFLREDDNRILRNGNSNGLNPSVSMIGRGKVRPEAVIEAANLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLDGQIPLPTFPGNLLGPSNTNQFGCLPESTPAGMQGARHAHYGISLSDLHLNKLQSGLFPAGFPPLDHAATPMRVSNNPTLPKPSMSENVSCLLSMANSTQSPKKLDDGKTPHLMLFGQKILTEQQISLSSSGDTLSPVLTRNCSSDGNADKVANFSDGSGSALHHQGQHERSSCERFQWYRDNHQESEANLETGHCKVFMESEDVGRTMDLSLLQSYDDLNRKLADMFSIEKSQMLSQVLYRDKTGAVKHIGDEPFSDFTRTARRLTILMDSGSNNVGV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00830 699 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Cca02g00830 699 SUPERFAMILY DNA-binding pseudobarrel domain 110 218 IPR015300 -
Cca02g00830 699 SMART B3_2 117 219 IPR003340 GO:0003677
Cca02g00830 699 Gene3D - 610 697 - -
Cca02g00830 699 Gene3D - 323 397 - -
Cca02g00830 699 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Cca02g00830 699 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca02g00830 699 Gene3D - 115 219 IPR015300 -
Cca02g00830 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca02g00830 699 CDD B3_DNA 116 217 IPR003340 GO:0003677
Cca02g00830 699 PANTHER AUXIN RESPONSE FACTOR 6 690 - -
Cca02g00830 699 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00830 Cca-Chr2 23157769 23161881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00830 14 699 B3 DNA Binding Superfamily AT4G30080 58.453 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca02g00830 B3 2.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00830 - - gmx:100796522 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00830 02 23157769 23161881 Cca02g02025 02 40167503 40170847 ECH
Cca02g00830 02 23157769 23161881 Cca02g00830 02 23157769 23161881 ECH
Cca02g00830 02 23157769 23161881 Cca10g00522 10 5513342 5516518 ECH
Cca02g00830 02 23157769 23161881 Cca04g00798 04 7953764 7957517 ECH