Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00825 ATGGACAACAAAGAAAATCACTTATCAATGGTGGCCTATGAGACGAGTAGCAAAAAGAAGGTTGGGAAGGATGCAATAGGCAAGTCCTCTGATGGAAGGGAACTTTCCAGGGTCTTTTCTGAGGATTATGATTCAGAACAGATTTTGATATTGGATCCTAGGGGACCAAGAGTAAATAGTTGGAACAAAATTTTCTTAGCAGCTTGTTTGATTTCATTATTTGTGGATCCCCTATTCTTTTACTTACCAGTGGCTAAGAAGGACAAGTGCATTGATATGTCCGATGGTCTTGAAGTGTCCCTTACCGTAATCCGGTCATTGATTGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCGTCCAAGTACACGAGGAAAGACTTCTGGATTGATCTAGTGGCTGCCCAACCACTTCCACAGGTATTGATTTGGGCCGTAATTCCTAATCTAAGAGGCTCTCAAATGATTGCTTCAAGGCATGTTTTGCGCCTTGTTTCGATTTTCCAGTACCTCTTGAGGCTGTATCTTATTTATCCTCTATCATCTGAAATCATCAAGGCAAATGGGGTAATGATGGAGAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTAGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATAGAACGGCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAATATCCACGCTGCCAGTATCATTATCTTGATTGTCAAAGCATGGATGACCCAAATAGGATTTATTGGTTAAGATCAAGCAATCTCTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTACTGATGCTCTAGATTTGGGAATTACGGGCTCAAAATTCATCAACAAATACTATTACTGTCTCTGGTGGGGACTAAGGAATCTCAGCTCTGTGGGACAGAATCTCTTAACAAGCACACGTGTTGCAGAGATCAATTTTGCTGTGGTCGTTGCAATTCTTGGATTAGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTACGCGACTAGAAGAATGGAGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAGCTCCCTCATTATCTGAAGCAAAATGTGCGACGTCATGAACAATTCAGATGGGTTGCTACTAGGGGAGTTGATGAGGAAACTATTCTCGGAGACCTTCCCACAGATCTACGACGTGACATCAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGGATGCTAGATGCAATCTGTGAAAGGCTGAAACCTTCTCTTTTCACTCCCGGCGCCCACGTGGTTCGCGAAGGAGACCTTGTGAATGAGATGATCTTCATTGTTAGAGGATGCCTAGATTCTTGCACCACAAATGGTGGCAGAACAGGTTTCTTCAACTCCTGCAGGCTCGGCTCTGGCGACTTCTGTGGCGAGGAGCTCTTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGTGCTCCCTTCCTCAACTCGCACGGTGAAGGCCATCACTGAGGTGGAGGCCTTTGCACTCATTGCAGAGGACTTGAAGTTTGTGGCAGCACAGTTCCGGAGGCTGCACAGCAAGCAACTGAGGCACACTTTCAGGTTCCACTCACACCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCGTGGTTCAGGTACAAGAAAATGAAGGAGACGAGCGAGCTCAAGAGAAAGGAGAAACTCATGATGATGGCATATGTGCCTGGAAACGGCACTGAACACTTCTCTGCACCACTGCAGGCTCCAATGGGCACACTGTATGCTGCAAAACTAGCTTCAATCCCAAGGAAAGGTAGGAGTTTGAGATATGGGCCTGAACTTGACATTCTTGGCTCATTGAGGAAGCCCCTCGAACCGGACTTTACTGATGATGATGATTGA 2052 0.4469 MDNKENHLSMVAYETSSKKKVGKDAIGKSSDGRELSRVFSEDYDSEQILILDPRGPRVNSWNKIFLAACLISLFVDPLFFYLPVAKKDKCIDMSDGLEVSLTVIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASKYTRKDFWIDLVAAQPLPQVLIWAVIPNLRGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIIKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPRCQYHYLDCQSMDDPNRIYWLRSSNLSGLCDQNSDFFQFGIFTDALDLGITGSKFINKYYYCLWWGLRNLSSVGQNLLTSTRVAEINFAVVVAILGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMHHRQLPHYLKQNVRRHEQFRWVATRGVDEETILGDLPTDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPSLFTPGAHVVREGDLVNEMIFIVRGCLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKKMKETSELKRKEKLMMMAYVPGNGTEHFSAPLQAPMGTLYAAKLASIPRKGRSLRYGPELDILGSLRKPLEPDFTDDDD 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00825 683 Gene3D - 65 377 - -
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 116 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 233 243 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 322 339 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 348 359 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 366 375 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 PRINTS EAG/ELK/ERG potassium channel family signature 416 423 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca02g00825 683 Pfam Ion transport protein 60 380 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca02g00825 683 PANTHER PROTEIN CNGC15A 15 680 - -
Cca02g00825 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 680 - -
Cca02g00825 683 SUPERFAMILY Voltage-gated potassium channels 52 375 - -
Cca02g00825 683 SMART cnmp_10 453 584 IPR000595 -
Cca02g00825 683 Gene3D Jelly Rolls 451 571 IPR014710 -
Cca02g00825 683 CDD CAP_ED 453 584 IPR000595 -
Cca02g00825 683 Gene3D Helix hairpin bin 379 444 - -
Cca02g00825 683 ProSiteProfiles cAMP/cGMP binding motif profile. 453 538 IPR000595 -
Cca02g00825 683 SUPERFAMILY cAMP-binding domain-like 382 575 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00825 Cca-Chr2 22906906 22913219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00825 27 681 Ion Channels AT2G28260 64.580 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00825 K05391 - gmx:100804375 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00825 02 22906906 22913219 Cca02g00825 02 22906906 22913219 ECH