Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00820 ATGTTCCCCTCAACTTCATCTTTCAGTCATAACACAACGCACACTCACTATGTCACTCCTACGCTACGCTCATCCTCACTGTGCTTCCAAATTCCGTTCAACACTGGGCACAACGGCAACCGTTGGGGTAATATGGAAGTCACTAGCAGCCACAACAGCAGCAGCATGATGTGGTTTTTCAAAGATAGGGGTTTTGATGACAACACTGCACAAGGAATGTTCCGAAGGTGCAGGCGCCTTGAGAGTGTGCATGAGGAGAGAGCAAGTGAGAATTGGGAGTATTTGAGAAGCATAGGCATTCAAGAAAGGAAACTTCCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCTTTGGATCTCTATGACAAGATTGTGCCCACAGTTGAGTGTCTCAAAACCCTAGAAACAAAGCCCCATGAGGTTGCTTCTGCAATTGCCAAGTTCCCTCACATTCTCTCAAACAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCATTTTTTCAGGCTTTGGGCATCCCTGAAAAGCAAATTGGGAAAATGATACTCTTCAACCCTAGGCTTATCAGCTACAGCATTGAAACTAAGCTGGCAGAATTTGTGGACTTTCTAGCTAGCCTTGGTCTCAGTAAGGATGGAATGATTGGAAAAATTATAGTTAAGGACCCTTGCATTATGGGTTATAGTGTTGACAAACGCCTTCGCCCTACTTCGCAGTTTCTCAAGTCAATAGGTTTGAGTGAAATGGATCTTCAAGCAGTGGCTGTGAACTTCCCAGCAATCTTGAGTAGGGATGTGAACAAGGTTTTGGTGCCGAATTACGCGTATCTGAAGAACAGAGGATTTCAAGACAGACAAATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGCATCCAGAATTCGTTGGAGCCGCGGATCAATTTTTTAGTGGATGTAATGGGGAGGCAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGGCATGGCCTGAAGAGAAGAGTAGAACCGCGGTACAAGCTTTTGAAGGAGAGGAATTTAAGTTGTAGCTTGAGTGAAATGTTGGATTGTAATAGGAAGAAGTTCTTCATCAAGTTTGGCTTGTTAGAAGGACATGTCTTGAGTGAGTCACCAGATGAAGCAGCTTTTGTCATAGCTGCAAGGAGCCAAGGACACAAACAAGCATATATTATTGCATTGCATGAATTAAATCATAAAAGTGGAAAAAAGGTTGACAGTGGTCAAAATTGTCGCCTCGGATGTGAGATTATATAA 1284 0.4315 MFPSTSSFSHNTTHTHYVTPTLRSSSLCFQIPFNTGHNGNRWGNMEVTSSHNSSSMMWFFKDRGFDDNTAQGMFRRCRRLESVHEERASENWEYLRSIGIQERKLPSIVSKCPKILALDLYDKIVPTVECLKTLETKPHEVASAIAKFPHILSNSVEEKLCPLLAFFQALGIPEKQIGKMILFNPRLISYSIETKLAEFVDFLASLGLSKDGMIGKIIVKDPCIMGYSVDKRLRPTSQFLKSIGLSEMDLQAVAVNFPAILSRDVNKVLVPNYAYLKNRGFQDRQIVALVVGFPPILIKSIQNSLEPRINFLVDVMGRQVDEVIDYPCFFRHGLKRRVEPRYKLLKERNLSCSLSEMLDCNRKKFFIKFGLLEGHVLSESPDEAAFVIAARSQGHKQAYIIALHELNHKSGKKVDSGQNCRLGCEII 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00820 427 PANTHER CGI-12 PROTEIN-RELATED 55 372 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 320 351 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 71 101 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 287 319 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 Pfam mTERF 166 365 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 Pfam mTERF 50 211 IPR003690 GO:0003690|GO:0006355
Cca02g00820 427 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 55 372 - -
Cca02g00820 427 Gene3D Transcription termination factor 3, mitochondrial 135 373 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00820 Cca-Chr2 22836826 22838563 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca02g00820 mTERF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00820 K15032 - gmx:100816929 609.757