Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00811 aTGGGTAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAAAGAGTACATAGACAAACATGGAATTGGAGGGAACTGGATTGCTCTTCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTCAGGTGGCTTAATTATCTTAGACCAAACCTTAAGCATGGAGAGTTTTCTGAAGATGAAGATAGAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAAATGATGGGAATTATGAACCCCTCAGCACTGAAGAAGCCTCACGAAGTTACCATGCTTCAAAGCTCAACACCATCTTCATCCAACTCCTCATCTTCAACATTATCATTCAAAACCAACCACAACAACTCTTGCTACCAACCACAAGTGTCCTTCACTGAGTCCATTTCATACTCTAGTCTTTTGAGTGGCAATTCTTCCACTACTTGTGCTTATTCTTCCACTTTTCAAGCTCAAGAAAGCTCTTTTGGTTTTGGCCCAATTCAGAATTGCCAAGTTAGTAGTGGCTTTGTGTTGGGGGGTGAAACAAGTTGTAGCTCTTCTTCTGATGGGAGCTACAACAACAACAACAATCAGATGAGCCATGTCAAAGAAGCAGAACTTGGGTATGGTGGCGATGGATCTTTTGGCGAGCATGTAATAATAGGTGGTCTTGGTTACCTCTCTAGTGGGGTGGAAGATTTAGCTACACAAAAGTTGATGATGCCCTCCAATGCTGGTAGGGTAAGTGGGTGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTGCATTAGATTATGGTCTGGAAGAAATTAAACAGCTAATAAGCACTAGTAGTTGCAATAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTCATGTACTATTGA 1002 0.4172 MGRAPCCDKANVKKGPWSPEEDEKLKEYIDKHGIGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSALKKPHEVTMLQSSTPSSSNSSSSTLSFKTNHNNSCYQPQVSFTESISYSSLLSGNSSTTCAYSSTFQAQESSFGFGPIQNCQVSSGFVLGGETSCSSSSDGSYNNNNNQMSHVKEAELGYGGDGSFGEHVIIGGLGYLSSGVEDLATQKLMMPSNAGRVSGWTGEESRLWGESALDYGLEEIKQLISTSSCNNFMFDDSKTGEMVMYY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00811 333 Gene3D - 7 68 - -
Cca02g00811 333 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca02g00811 333 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca02g00811 333 MobiDBLite consensus disorder prediction 130 150 - -
Cca02g00811 333 CDD SANT 16 62 IPR001005 -
Cca02g00811 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca02g00811 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca02g00811 333 MobiDBLite consensus disorder prediction 131 150 - -
Cca02g00811 333 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca02g00811 333 PANTHER TRANSCRIPTION FACTOR RAX3 1 253 - -
Cca02g00811 333 SMART sant 13 64 IPR001005 -
Cca02g00811 333 SMART sant 67 115 IPR001005 -
Cca02g00811 333 CDD SANT 70 113 IPR001005 -
Cca02g00811 333 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca02g00811 333 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca02g00811 333 PANTHER OS09G0431300 PROTEIN 1 253 - -
Cca02g00811 333 Gene3D - 70 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00811 Cca-Chr2 22389399 22391397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00811 1 119 MYB Transcription Factor Family AT5G57620 88.235 3.15e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g00811 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00811 K09422 - gmx:100820139 439.884