Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00805 ATGGAAGGTTGCAAAAAGTCTCCACTAAAGCCTTGGAAGAAAGGACCAACCAGGGGCAAAGGTGGCCCCCAAAATGCCGCATGTGAGTATAGAGGTGTTAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCCTTGGCCTATGATGAGGCTGCAAGGAGACTCTATGGCCCTGAGGCTTACCTTAACCTCCCCCACATGCAACCTAACTTCACCACTTCAAAATCTCAAAAGTTCAAGTGGTTCCCTTCCAGGAACTTCATTTCCATGTTCCCCTCACGTGGACTACTCAATCTCAATGCTCAACCGAGTCTCCACGTCATCCACCAGAGGCTGCAACAGCTTAGGCAAAATGGGGTGGTTGCAATTCATCAATCACCAGATCATTCAAGTTCATCCACTGATCCAAAGGTGGTACAACTTGATAACCTAGGCTGCCAAAACCATGCAGAAACTCTCCCTCCAGTGCAACATGATCATGCTCAAACTTCACCTCAGAAAACACTTGGTGATTCTGAGGAGAAGCCTCAGATAGACCTACTTGAGTTTCTTCAACAGATGGGAATACTAAAAGAAGAAAGAGGGTCAGAGAAAACTGAGAGCACAGGAAGTTCAACACTGTCTGAAGCTGCATCAAGAGATGACAGTGAACAACCAGGAGTGTTTTCTGACATGAGTGTTAACTGGGAGGAGTTGATTGAGATGCATGACCATGGAGTTGCGGATAATTTTCTTGCATCAGAAGGTATCCAGTTTGAAGCATGTGACATAAACGAGGACCTTACTTTCTCTTCTTCCATTTGGAACTACTAA 876 0.4612 MEGCKKSPLKPWKKGPTRGKGGPQNAACEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPEAYLNLPHMQPNFTTSKSQKFKWFPSRNFISMFPSRGLLNLNAQPSLHVIHQRLQQLRQNGVVAIHQSPDHSSSSTDPKVVQLDNLGCQNHAETLPPVQHDHAQTSPQKTLGDSEEKPQIDLLEFLQQMGILKEERGSEKTESTGSSTLSEAASRDDSEQPGVFSDMSVNWEELIEMHDHGVADNFLASEGIQFEACDINEDLTFSSSIWNY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00805 291 MobiDBLite consensus disorder prediction 221 242 - -
Cca02g00805 291 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Cca02g00805 291 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 288 - -
Cca02g00805 291 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 MobiDBLite consensus disorder prediction 170 195 - -
Cca02g00805 291 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Cca02g00805 291 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g00805 291 MobiDBLite consensus disorder prediction 178 192 - -
Cca02g00805 291 MobiDBLite consensus disorder prediction 213 242 - -
Cca02g00805 291 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Cca02g00805 291 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00805 Cca-Chr2 21997608 21998680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00805 5 291 AP2-EREBP Transcription Factor Family AT3G57600 48.789 5.70e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00805 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00805 - - gmx:100808363 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00805 02 21997608 21998680 Cca02g00805 02 21997608 21998680 ECH