Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00804 ATGGATGGTGACGACGATCCTTCAGCACTTGCATGGCTTTGGGTCGTTGAAGCCCTATCAGCCTGCAAAAAAATCTCTCCTCCCACTTTACAGCGTATGATTAATTCAGGCCCTGTGAAGGATGAGAAATTAAGTGAAACCACAAGGGAATTGGTTGCTCTGAGGTGTTTGGAGGAAGTGTCTGCTTGTGTGGTTGACACTGACGCTTCTTCTACCGTGGATTCCAGAGTTGGATTCGATTTTTCGCGTGGTTGTGAAGATGTCCTCCAAGAAACATTGGGTGAGTTAATCCCATTATCAAAACTGAAAATGGCTGGAGCAGAGCTTTTGAAATGGGATGTTCAGCCATTTGTTAAGCACAAAAGAGCTGACACTTTTAAATGTCACTTAGAGCAGCTGAGAGAATCGATCTTGGAAGGTACTCATCCACATACTGATTACATGAAAGAAAGAAGTGGGTTATTTCCTCAGAATGGAAGTTATACAGTGGCTGTAAGTGACGAAAAATATGATCATTCAGATAAGGATGCGGGGAACTCCACTGTTGCAAAAAATATGGGAGAAAAAGAGAACTCAGTGTCCTTAATTTTAGGTGACGGGAATAAATCTTCAAAAGAACACATGCTTGATAATAATTTTTTGCCATCTAAGAGTAGGGTTCACTCAGCTGATGATCATCTTACAAGACACCGTGGAAAGCAAGTTTGTATAAATGAATGTGATGATTTCTTTAGAAATTCAAAGAGGATTAAATGTTATGCATATACAAGTTTTGATTCTAAGAAAGAAAAACCAGTTTCTCAACTCAGACAGGAAGCTTCAGAACAATTAACTGAAAGAATTCTTCCAAGTTCTGAGCAAGGAAAGCATCATGCTGACAACAATAACATGGAAATTCTGGGTGATGTGTCCTCAGAGGATAGTCACAATAAATGTACTGCTTCAAAATTGTGCCAATCCAGCAGCCATATTGAAGTCTTTCATGATGAATCAAATATTCCTTTTAATGATACTTTGATGCTTCAACATTCATTTGGAGGCGAAAATTTTCAGCAACGGCAGGTTGAGTCAATTTCATATATTGCACTTCCAGATAGAATCCAGCATAAGATTTCTGGAACTAAACCCTGGTCTAAACAGGAAACAGATTTACAACTCGAAGATCCTAATGGCTCACTGCGGCAAAGTGCTAGTGTTAAAGCTCCAGATCATACCGAGAATAGTTGTGGGGTAGAGATATCGGGTGCTATTGTTTATCAAGGTGAAAAGATTAACCTTGTGATAGAAAAGAAGGCAGATCAAAATCTTTGTTTGAAGTGTAATGAAGGTGATCAATTACTGATTTGTGATGCAAATGTTGTCCAACCAGTGGTTCCTGAAAATTGTCTTGGTATGACAACCACCATTATGCCTCAGCACACCTATGTAGCTGAACCTTGCAATAATACATCAATGGATGAAACTGATGGCACTGCACATCATGCCATTCCAACAAATGATTCTAATGCAGAAAAAAATCAGCATATGATTAATTTACACCAACCTAAACAAAAGGAACCAGATATTCGACCTTTAAATCTCTCTCAGAAGCCAGTTGCTAGTGATAAAACTAAAGTTGATATGGTTAATGAATGTGGAGCAGAGTTATCAAGTGATGGTGATGGATATCACAATGAAAAAAATTATTTTGAAGCAAGGACTGAATCAAATGAACAAAATCTTTGCATGAAGTGTAATGAAGGTGGCCAATTACTGGCTTGTAAGAAAACTACTTGCCCATTGATGGTGCATAAAAACTGTCTAGGTGCATCTGCTCAGTTGGATGCAAAGGGCAACTTTTTTTGCCCATTTTGTGCATATTCTCAAGCTATTTCAGAATATCTTGAAGCCAAGAAAAATGCTTCCTTTGCAAGGGAAGAATTAGCCATATTCATTAGTAAAGGTATACAAAATCAAGCTGCAGAACTTGTTTATGATTTTCAAAGACAAGAACATTGTTTTTCAAGAAAGAGTAGCAAGTGTGAACATAGTCATGTCAAAGACAACGAAAATGACCAGTTAACAGGGTATGAAGGCAATAGAGAAGATCAGGATGGTGGGCATCCAAATGAAGCAAATAATCTTCAGTTTGAAAAATGTCATCAACAAGCTCCTATACCATGCATTCATTCATCATGCAGAGAAAAGGAAAATGTAAATAATGGATATGATAAAGTTTTAAGAGAAGAGGAAATAGGTGAAATGCCAAATGCAAAGAGCTTAACTGGTGGAAGAGTTGAAGAAACTGAAGTGTCAACTGATCATGTAGATAGACATGTTGGTGATAAATTTACTTGTGAAAAAACAAATATTGCTCCTGTTAATAAAAGCAATGCTGGAGAAGTTCCGCAAGAAATGATTAAACAGCACAATATTGATGGAACAATAGAGCCTGTCCGTGCACATGATACTGGAAAAGAGGAAATTTCTGAACATGAATGTGAAACGCATAGTATTCCTAGATACACCATGAGATTCCGTGAACATGTAACACAATGCAAACCCCAAGCAAGCCCGGTATTTCATTGTAGTCAGTTTAGACGAAGGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAGGGAGGGAGTGAAGAAGTTTGGGTTGAATGACCCAAAGAAATGGAACAAAATTTTAGCATTCGGTTCTTGTGTGTTTGAGATGACTGGTAAGCGTCGGACATCACAAGACCTAAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2784 0.3807 MDGDDDPSALAWLWVVEALSACKKISPPTLQRMINSGPVKDEKLSETTRELVALRCLEEVSACVVDTDASSTVDSRVGFDFSRGCEDVLQETLGELIPLSKLKMAGAELLKWDVQPFVKHKRADTFKCHLEQLRESILEGTHPHTDYMKERSGLFPQNGSYTVAVSDEKYDHSDKDAGNSTVAKNMGEKENSVSLILGDGNKSSKEHMLDNNFLPSKSRVHSADDHLTRHRGKQVCINECDDFFRNSKRIKCYAYTSFDSKKEKPVSQLRQEASEQLTERILPSSEQGKHHADNNNMEILGDVSSEDSHNKCTASKLCQSSSHIEVFHDESNIPFNDTLMLQHSFGGENFQQRQVESISYIALPDRIQHKISGTKPWSKQETDLQLEDPNGSLRQSASVKAPDHTENSCGVEISGAIVYQGEKINLVIEKKADQNLCLKCNEGDQLLICDANVVQPVVPENCLGMTTTIMPQHTYVAEPCNNTSMDETDGTAHHAIPTNDSNAEKNQHMINLHQPKQKEPDIRPLNLSQKPVASDKTKVDMVNECGAELSSDGDGYHNEKNYFEARTESNEQNLCMKCNEGGQLLACKKTTCPLMVHKNCLGASAQLDAKGNFFCPFCAYSQAISEYLEAKKNASFAREELAIFISKGIQNQAAELVYDFQRQEHCFSRKSSKCEHSHVKDNENDQLTGYEGNREDQDGGHPNEANNLQFEKCHQQAPIPCIHSSCREKENVNNGYDKVLREEEIGEMPNAKSLTGGRVEETEVSTDHVDRHVGDKFTCEKTNIAPVNKSNAGEVPQEMIKQHNIDGTIEPVRAHDTGKEEISEHECETHSIPRYTMRFREHVTQCKPQASPVFHCSQFRRRKIPWTAEEEELIREGVKKFGLNDPKKWNKILAFGSCVFEMTGKRRTSQDLKDKWKNMCKAHSKSK 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00804 927 Pfam Myb-like DNA-binding domain 865 918 IPR001005 -
Cca02g00804 927 SMART sant 862 922 IPR001005 -
Cca02g00804 927 SMART PHD_3 574 619 IPR001965 -
Cca02g00804 927 MobiDBLite consensus disorder prediction 373 403 - -
Cca02g00804 927 Gene3D - 856 923 - -
Cca02g00804 927 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 467 - -
Cca02g00804 927 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 472 922 - -
Cca02g00804 927 ProSiteProfiles Zinc finger PHD-type profile. 572 621 IPR019787 -
Cca02g00804 927 SUPERFAMILY Homeodomain-like 860 921 IPR009057 -
Cca02g00804 927 SUPERFAMILY FYVE/PHD zinc finger 566 622 IPR011011 -
Cca02g00804 927 ProSitePatterns Zinc finger PHD-type signature. 575 618 IPR019786 -
Cca02g00804 927 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 628 IPR013083 -
Cca02g00804 927 MobiDBLite consensus disorder prediction 677 701 - -
Cca02g00804 927 MobiDBLite consensus disorder prediction 677 706 - -
Cca02g00804 927 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 858 924 IPR017930 -
Cca02g00804 927 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 472 922 - -
Cca02g00804 927 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 467 - -
Cca02g00804 927 MobiDBLite consensus disorder prediction 372 406 - -
Cca02g00804 927 CDD SANT_TRF 864 921 - -
Cca02g00804 927 ProSiteProfiles Myb-like domain profile. 858 920 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00804 862 922 Single Myb Histone (SMH) Gene Family AT1G17520 42.623 1.08e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g00804 Myb_DNA-binding 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00804 - - ccaj:109810464 1914.04