Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00800 ATGGCAGATCCTTACTCCAATTTCTTCTCACCAAGTTTCTTCCACTCCCGCTCTTCAAACCCTTcaccccaccaccaccatccatatcacaacaacttcatcaaccaagccaccaccaccaccaacatcaacaacaaccacaacAGCTTTTTCCACTTCCACCACTTTCAAACCACTATCACAtcttcggcttgttcttgctcttcttcttcACCCCCCTCCCCTCCCCTCAGAAAAGCCCTTCCACTTTTGAGTCTCAGCCCTACAAACGAAGAAGAGGATCAGGATCAGTTTTGCACTGCCATGGATGTGGAAGAGGACTGCAACAGGACCCTACACTTCAAAGAGGAAGAGCAAGAAGAGGATAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAACCCTAGTGCTGCTGAGATAGCTTCTGTGCTGTCTTCAGCTTGTTCCACTGACAAAGAACAACAACAAGGAGGAGGAGGAGATGGTGataacaacaataataataacaataatGGAAGTGAGGATTCTTCTTCAGGGTTCTTGTCAAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACACAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTAAAAGACTTCAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGGGGGGATTGGAGAACGCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATATCAAAGCTTTTGGGAGTGGCCATGCAACTTATGGGATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTTAGCCCCGTAA 1101 0.4114 MADPYSNFFSPSFFHSRSSNPSPHHHHPYHNNFINQATTTTNINNNHNSFFHFHHFQTTITSSACSCSSSSPPSPPLRKALPLLSLSPTNEEEDQDQFCTAMDVEEDCNRTLHFKEEEQEEDSVTVALHIGLPNPSAAEIASVLSSACSTDKEQQQGGGGDGDNNNNNNNNGSEDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHATYGIDGFEEEEEPASEVEQDNDLAP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00800 366 PANTHER ZINC FINGER PROTEIN WIP2 40 363 IPR043584 GO:0003700|GO:0010468
Cca02g00800 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 309 IPR013087 -
Cca02g00800 366 SMART c2h2final6 289 309 IPR013087 -
Cca02g00800 366 SMART c2h2final6 205 227 IPR013087 -
Cca02g00800 366 Gene3D Classic Zinc Finger 204 227 - -
Cca02g00800 366 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 40 363 - -
Cca02g00800 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Cca02g00800 366 SUPERFAMILY beta-beta-alpha zinc fingers 271 309 IPR036236 -
Cca02g00800 366 Gene3D Classic Zinc Finger 267 342 - -
Cca02g00800 366 MobiDBLite consensus disorder prediction 146 180 - -
Cca02g00800 366 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00800 Cca-Chr2 21646586 21649311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00800 1 363 C2H2 Transcription Factor Family AT3G57670 61.125 1.42e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00800 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00800 - - vra:106771283 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00800 02 21646586 21649311 Cca02g00800 02 21646586 21649311 ECH
Cca02g00800 02 21646586 21649311 Cca10g00366 10 3854408 3856690 ECH
Cca02g00800 02 21646586 21649311 Cca04g00568 04 5701247 5703785 ECH
Cca03g01986 03 39856311 39859153 Cca02g00800 02 21646586 21649311 PCT