Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00795 ATGTCTGAGGTTTCTCAATTCCCAGCTGGCCTTAGGGTCCTTGCAATTGATCATGACCCCTCAGTTCTTGAATTCACTAGGCAAATATGTAGTCAACTCAAATATCACGTTGTCACATGCACCGAATCACCATTTGCTTTGAATCTTGTGAGGGAAATAAAGGCTTGCATCGATGTGATCCTCATGGAGCTTGACATGCCAAACTTGGATGGCCATGAATTCCTTCAACATGCCAAGAAGGATATTCAAATTCCAGTTATCGTGATGTCTGCTGACAATGCTAAGGGTTCCGTGATGAAGGCTGTAAGAAACGGGGCTTGTGATTATTGGAATAAGCCCTTGCATGTGAATCAGTTCAGGAACATGTGGATACATGCAGCAAGGAAAGCCTTTAGTGAAAACAAGAATTATGTCATATTGGAGAATAATAATTCTGAATTTGGTTCTTCTACTGTTATTGAAGCCACAGAAATATTCAGAGACCAAAACAATAGCAGTTCAAGAGAATCTGATGAATCGGAACATTCTTGTCAACCCCCAGCAAAAAAGCCACGTGTAATATGGACACCAATGCTGCATCGTGAATTTCTCAAGGCAGTGAAGCAAATTGGGGATGATAAAGCTGTGCCAAAGAAAATTCTTGAAGTGATGAATATCGCTGGTTTGACAAGAGATCACGTTGCCAGTCATTTGCAGAAATATAAGCATCATATGAAGAGTACATCTAATGGGGCAACACAGCAACAGAATGAGATGAAGAATACATCTAATGGAGCAACACAGCAACAGAATGAGATGAAGAGTACACTGAATGGAGCAACACAGCAACAGAATGAGATGAAGAGTGCATCTAATGGAGCAACACAGCAACAGAATGAGGTGAAGAGTACATCTAATGAGATGGCATTGCCAAACACAGAATCTGGTGCACTTGTGAGAGTGGACTTCCAATCTTTGGCTGCTACTAACCATGTTTCCTATAACACCTTGACAACCTTTGATACAGAAAAAGAGGCTAACCATTCCAATCAAGAACAAGGTGTGACACATGGTCATCCTTCTAACATTGCCATTATCAATAATTTTTCTCAGCCAATCATGGATCCATCTATATATGGAGTGTTCAAGGATACAcagcagcagcagcagcagaagACAATGATGCATCATCAAATTAGTCCTATCAATCTTCAGCCATCTTTTGCCACCGAGAATATTAATAATGATTTAGTATCACCTCAAACTATTGATGCAAACACCTTAGGTTTCACAAGTGGTGATATGAGATCCTTTTCTGCACAAGGGTCAGATGCACTAGTTCCCTATGGTTCACAATCTGGTGACTTAATTTATGATCAAGAGTATACCGACATCCTAACTTGGTTACTTGAAGATTCAGCATCTGCAAGAGACCCAAATTTCTCCAAAGATATTGTTGATCACAACACAACAAATTTGATCAGCTAA 1467 0.3926 MSEVSQFPAGLRVLAIDHDPSVLEFTRQICSQLKYHVVTCTESPFALNLVREIKACIDVILMELDMPNLDGHEFLQHAKKDIQIPVIVMSADNAKGSVMKAVRNGACDYWNKPLHVNQFRNMWIHAARKAFSENKNYVILENNNSEFGSSTVIEATEIFRDQNNSSSRESDESEHSCQPPAKKPRVIWTPMLHREFLKAVKQIGDDKAVPKKILEVMNIAGLTRDHVASHLQKYKHHMKSTSNGATQQQNEMKNTSNGATQQQNEMKSTLNGATQQQNEMKSASNGATQQQNEVKSTSNEMALPNTESGALVRVDFQSLAATNHVSYNTLTTFDTEKEANHSNQEQGVTHGHPSNIAIINNFSQPIMDPSIYGVFKDTQQQQQQKTMMHHQISPINLQPSFATENINNDLVSPQTIDANTLGFTSGDMRSFSAQGSDALVPYGSQSGDLIYDQEYTDILTWLLEDSASARDPNFSKDIVDHNTTNLIS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00795 488 MobiDBLite consensus disorder prediction 238 299 - -
Cca02g00795 488 SMART REC_2 11 123 IPR001789 GO:0000160
Cca02g00795 488 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Cca02g00795 488 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 183 237 IPR006447 GO:0003677
Cca02g00795 488 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Cca02g00795 488 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 7 344 - -
Cca02g00795 488 MobiDBLite consensus disorder prediction 161 185 - -
Cca02g00795 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 239 IPR017930 -
Cca02g00795 488 SUPERFAMILY Homeodomain-like 181 240 IPR009057 -
Cca02g00795 488 MobiDBLite consensus disorder prediction 234 299 - -
Cca02g00795 488 Gene3D - 4 135 - -
Cca02g00795 488 CDD REC_typeB_ARR-like 13 127 - -
Cca02g00795 488 Gene3D - 180 240 - -
Cca02g00795 488 MobiDBLite consensus disorder prediction 164 179 - -
Cca02g00795 488 Pfam Myb-like DNA-binding domain 188 235 IPR001005 -
Cca02g00795 488 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 344 IPR045279 GO:0009736
Cca02g00795 488 SUPERFAMILY CheY-like 10 144 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00795 Cca-Chr2 21492530 21494388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00795 1 248 Response Regulator Gene Family AT2G25180 37.165 9.77e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca02g00795 Response_reg 8.4e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00795 - K14491 ccaj:109788215 775.778