Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00792 ATGGGGAAGAAGAAGAGAAGTAGGGTTTCCGAAGACGAGGAAATCGAATCCGATGTCAACCCTTCCGATCACAACCAAAACACCCTCTATCAGGTTCTTGGTGTGGAGAGAACAGCATCACAACAGGAAATAAAGAAAGCATACTACAAGTTAGCATTGAGGCTGCATCCTGATAAGAACCCCGATGATGAGGAAGCTAAAGCAAAGTTTCAACAATTGCAAAATGTTATCTCAATTCTCGGGGATGAAGAAAAACGAGCAGTTTATGATCAGACTGGTTGTGTTGATGATGCTGAGCTTGCAGGGGACGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGGTCACTGAAGCTGACATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTGATATGTACAAGAAGTGCAAGGGTAATATGAACAGGCTATTCTGTTCGATGCTTTGTTCAGATCCTAAACTTGACTCTCACCGATTCAAGGATATTCTTGATGAGGCTATAGTTGCTGGAGAGTTGAAGGATACAAAAGCTTACAAGAAATGGGTAAAGAAAATATCTGAAATGAAGCCACCGACAAGTCCCTTAAGAAGAAGGGCAAAATCATCAAATAAGCAATCAAAAACAGATCTGTATGCTATGATATCACAACGCCGAGATGAGAGGAAAGAGCGCTTTGATTCTATGTTCTCATCTCTAATTTCAAAGTATGGTGGCGGTCCGATGCCAGAACCCTCCGAAGAGGAATTTGAAGCTGCACAGATAAACAATATTAAAGTGACAACATGTCTCTTCTGCATTTCTTTACTTGACTTTGTTGTCCTTCCATCACTTTCTCTCTCTCAACTTTCTTTCGCTATAGGTTTGTGTTCAGTTACAGCATTTGGAAGAAGCAAAAGGCTTCTTCTGGAGTTTTCCATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGGCCAAACAAGCAGACAAGTCCAAAGTGACAGCTCAACAAGAGATGGACCTGATAGGAAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAAGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCGAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGTTACTAGCTGTTGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCGAAGCTTCTTAACGAAGACCTTGCTTACCCGGCTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCATTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCTCTACCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTGCAACCTTTTGTTCTCCGCTGTCGTAATGCATCATCTATTTTTCTACCGGTACATCTTATATCTAGTAACTCAAACTCAAAGGAAAAAACAAAAAACAAATCTAGCTCATGCATGGACAGCTTGACTTCTGAGAGTGACAAAACACATACGTTCAGTTGTTCAACGCATAAAAAAGATGACAATGCCGTTGTTGCCGATAAGCCACCCAATGGCATTTCAATAAGGACACGTATATCAAGAGGCAGTGATAGTACCTGCCAGCAAAGAGCTGATGCTCTAGAATCTCTGCTCGAGTTATGTGCACAGCTACTTCAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTGAGTCCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTCATG 2160 0.4102 MGKKKRSRVSEDEEIESDVNPSDHNQNTLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPDDEEAKAKFQQLQNVISILGDEEKRAVYDQTGCVDDAELAGDVVQNLKEYFRAMYKKVTEADIEEFEANYRGSDSEKNDLIDMYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIVAGELKDTKAYKKWVKKISEMKPPTSPLRRRAKSSNKQSKTDLYAMISQRRDERKERFDSMFSSLISKYGGGPMPEPSEEEFEAAQINNIKVTTCLFCISLLDFVVLPSLSLSQLSFAIGLCSVTAFGRSKRLLLEFSMESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLAKQADKSKVTAQQEMDLIGKLNYPYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNEDLAYPAVGTLNYMCPEAIAGMPYGYKSDMWSLGCCMFEIVAHQPAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPFVLRCRNASSIFLPVHLISSNSNSKEKTKNKSSSCMDSLTSESDKTHTFSCSTHKKDDNAVVADKPPNGISIRTRISRGSDSTCQQRADALESLLELCAQLLQQGKLEELAAVLSPFGEDAVSVSSRETAIWLTKSLM 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00792 720 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Cca02g00792 720 Gene3D Phosphorylase Kinase; domain 1 308 406 - -
Cca02g00792 720 SMART dnaj_3 27 85 IPR001623 -
Cca02g00792 720 ProSiteProfiles Protein kinase domain profile. 327 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00792 720 Pfam Protein kinase domain 327 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00792 720 Gene3D DnaJ domain 15 112 IPR036869 -
Cca02g00792 720 SUPERFAMILY Chaperone J-domain 27 98 IPR036869 -
Cca02g00792 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cca02g00792 720 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 321 624 - -
Cca02g00792 720 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 616 712 - -
Cca02g00792 720 MobiDBLite consensus disorder prediction 1 15 - -
Cca02g00792 720 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 321 624 - -
Cca02g00792 720 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 616 712 - -
Cca02g00792 720 SMART serkin_6 327 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00792 720 MobiDBLite consensus disorder prediction 604 624 - -
Cca02g00792 720 ProSiteProfiles dnaJ domain profile. 28 93 IPR001623 -
Cca02g00792 720 PRINTS DnaJ domain signature 30 48 IPR001623 -
Cca02g00792 720 PRINTS DnaJ domain signature 85 104 IPR001623 -
Cca02g00792 720 PRINTS DnaJ domain signature 48 63 IPR001623 -
Cca02g00792 720 PRINTS DnaJ domain signature 65 85 IPR001623 -
Cca02g00792 720 Gene3D Transferase(Phosphotransferase) domain 1 409 648 - -
Cca02g00792 720 CDD DnaJ 28 82 IPR001623 -
Cca02g00792 720 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g00792 720 CDD STKc_Nek 326 580 - -
Cca02g00792 720 MobiDBLite consensus disorder prediction 202 233 - -
Cca02g00792 720 Pfam DnaJ domain 29 90 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00792 Cca-Chr2 21319637 21334355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00792 327 578 MAP Kinase Kinase Kinase AT3G13530 32.549 2.01e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca02g00792 Pkinase 9.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00792 K08857 - gmx:100818558 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00792 02 21319637 21334355 Cca02g00792 02 21319637 21334355 ECH
Cca03g01990 03 39929645 39931182 Cca02g00792 02 21319637 21334355 PCT