Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00782 ATGCCAAGCACAAGAGCCACAAAGAGGCCCTATCCTCTCAACACCAAACATGAGAGATGTCTTATTGGGCATCATTTGACGTTGATTTTACTAGAGTCCTCGTCGAGTGTAAATGCCCCTAAGAGatgcttGTTCGGTTCTGTTGCTCGTGGGGCCTGTTTGAGGTCTGGAAAGCCCCCTCCTAGTGAAAGCACTCAAAGAGAGCTAGCAGATGATTTACGAGCCAGAGTTGCTGATGAGTTTATCAAAAGAAGGGAAGAGACTGAATGGTTTATTGAAGGTGATTTTGATACATATATTTCACAAATAAGGAAGCCTCATGTGTGGGGAGGTGAACCCGAATTGTTCATTGCTTCACATGTTTTGAAGATGCCTATCACCGTATACATGTATGATAAGGATGTTGGTGGCTTGATATCAATTGCTGAGTATGGCCAAGAATATGGCAAGGAAAACCCAATTAGAGTTCTCTACCATGGGTTTGGTCATTATGATGCATTAGAGATTCCTAAAAGAAAGGGCCCTAAGCCACGACTCTAG 540 0.4296 MPSTRATKRPYPLNTKHERCLIGHHLTLILLESSSSVNAPKRCLFGSVARGACLRSGKPPPSESTQRELADDLRARVADEFIKRREETEWFIEGDFDTYISQIRKPHVWGGEPELFIASHVLKMPITVYMYDKDVGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEIPKRKGPKPRL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00782 179 SUPERFAMILY Cysteine proteinases 69 167 IPR038765 -
Cca02g00782 179 Pfam OTU-like cysteine protease 42 164 IPR003323 -
Cca02g00782 179 ProSiteProfiles OTU domain profile. 32 170 IPR003323 -
Cca02g00782 179 PANTHER OS09G0487700 PROTEIN 42 179 - -
Cca02g00782 179 PANTHER OTU DOMAIN CONTAINING PROTEIN 42 179 - -
Cca02g00782 179 Gene3D - 34 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00782 Cca-Chr2 20892076 20895318 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00782 - - ccaj:109795157 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00782 02 20892076 20895318 Cca02g00782 02 20892076 20895318 ECH
Cca02g00782 02 20892076 20895318 Cca03g02641 03 47767160 47768853 PCT