Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00781 ATGGAACAAACCACGCTCGAAGCCATTCAGTTCAACGAGGAAATCCAGGGCATCATGGCTCCGCCGCCGGAAACCGCCAATTCCTTCACAGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGCGCCGGAAAGCCACCGCGCCACAGTCCCAAACCCTATCCGTTGACTTCCTTCGCCTCCGCCGGCGCCGCCAACCTCACCTTCCCTTCCAACGCCGCGCTGATCGAACGCGCCGCCAGGTTCTCCGTCTTCGCCGGCGAGAACTCGCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGCTCGACTCACGGAGGCGGCTCCGTCTCCGATCCCGCCGTGGAGAACAAGAACTCGAAGAGCGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCGAAGAAGAGTAAGAGCGGCGCCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTAAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCGTTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAATTAGCAGCAGTTAACCCAGTAATTGATTTCAACCTTGACAACTTATTGGCTACCGAAAGAGCATCTCCAATGGAATGTAACTTCCCCCCTACAGTTGCACCCGTCATGTGGCCAGAAATCCCACAGAACGGAAATAGACAACAGTATCAGCAACCATGGCAGGTTGATGCATTCCACCAAGCCCTTTGGGGGAGGGAAGAAAATAACACTAATTTCATGACACCAGAAAACTCACTCCTGAGTTATGACTCATCGGCAAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1005 0.5373 MEQTTLEAIQFNEEIQGIMAPPPETANSFTALLELPPTQAVELLHSPERAGKPPRHSPKPYPLTSFASAGAANLTFPSNAALIERAARFSVFAGENSPEVKRELPETDSNPSSTHGGGSVSDPAVENKNSKSAKRKEREKKVKASSKKSKSGADESSGDGEKLPYVHVRVRRGKATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDNLLATERASPMECNFPPTVAPVMWPEIPQNGNRQQYQQPWQVDAFHQALWGREENNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00781 334 Gene3D - 171 242 IPR036638 GO:0046983
Cca02g00781 334 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983
Cca02g00781 334 MobiDBLite consensus disorder prediction 144 165 - -
Cca02g00781 334 MobiDBLite consensus disorder prediction 109 127 - -
Cca02g00781 334 CDD bHLH_AtBPE_like 164 249 - -
Cca02g00781 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983
Cca02g00781 334 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 334 - -
Cca02g00781 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 243 IPR036638 GO:0046983
Cca02g00781 334 SMART finulus 180 230 IPR011598 GO:0046983
Cca02g00781 334 MobiDBLite consensus disorder prediction 95 165 - -
Cca02g00781 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 334 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00781 Cca-Chr2 20837336 20843916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00781 2 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 48.556 3.73e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g00781 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00781 - - gmx:100799133 537.339