Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00771 ATGGCTTCAAGTGTTAAGAGCACCAACTCAACAACTCAACTTGAACCACTCCCCCCACCCCCAcatcttcatcaacaacaaccacaacatcattttcatcatcatcatcatcaAATACCAGACCAACAAATTTCTTTTGGAATGATGCCATCTTCCTCATCATCACCCTCTATCCCCGGAAATTACTTAAGCAAAGATTCTGGAGCATATGATTTGGGGGAATTGGATCAAGCCTTTTTTTTGTATCTTGATGGACAAGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACACATCGTCAGGAATGAGGCCACCACCAACGCTCAACATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCATCCAATTCCAAGGTTAGCATGGAAATTCCCTCTACACAAACCAGTGGCTCCAAGAGACCACCAGAGCCATCCTTGGCCAAGCCCAACCCACACACTGAAGCCCCCTCTGCACCTGAACCACCCAAAGCTGTGAAGCGAGAGGGCAACCGCAAAGGAACAACGTCAAGTTCTGAGCAGGAAGCGCCCAAAACACCTGATCCTAAGACACTAAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGACTCAGGAAAAAGGCGTACGTTCAACAGCTAGAGTCAAGTAGGATTAAGCTTAATCAACTAGAACAGGAGTTACAGCGTGCTAGATCTCAAGGCATATTAATGGGTGGAAATGCACTTCTTGGAGGGGAGCAAGGGATTCCTATGTCTATGAATGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCGAGATGGTTAGAGGAGCACCATCGCCTAGTGTGCGAGCTAAGAGCTGCGGTCCAAGAACACCTTCATGAAAACGAGCTTAGGTTATATGTTGACAATTGTTTGGCTCACTATGATCATGTGATGAACCTGAAGAGCATAGTGGCTAAAACGGACGTATTCCACATTGTTTTTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGCTTCAAGCCATCTGAACTCATCAAGATTATTCTAAGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGAGGCTCTTTCCCAAGGGCTTGAAGCTCTCAACCAATCTCTCTCAGAAACTATAACTTCAGACTCTTTGTGGTGTTCTCCAAATATGACCAACTACATGGGACAAATGGCTCTGGCAATGAACAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCATCAACTTCTAACAACACGCCAAGCCGCGAGGTGTTTGTTGGCCATATCTGAGTACTTCCATCGCCTCCGAGCCCTGAGTTCTTTGTGGTTCACACGCCCTCGCCAAGAGTAG 1446 0.4537 MASSVKSTNSTTQLEPLPPPPHLHQQQPQHHFHHHHHQIPDQQISFGMMPSSSSSPSIPGNYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNTSSGMRPPPTLNIFPSQPMHAVPPSNSKVSMEIPSTQTSGSKRPPEPSLAKPNPHTEAPSAPEPPKAVKREGNRKGTTSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARSQGILMGGNALLGGEQGIPMSMNGISSEAAMFDVEYARWLEEHHRLVCELRAAVQEHLHENELRLYVDNCLAHYDHVMNLKSIVAKTDVFHIVFGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSETITSDSLWCSPNMTNYMGQMALAMNKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAARCLLAISEYFHRLRALSSLWFTRPRQE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00771 481 MobiDBLite consensus disorder prediction 89 108 - -
Cca02g00771 481 SMART brlzneu 186 252 IPR004827 GO:0003700|GO:0006355
Cca02g00771 481 MobiDBLite consensus disorder prediction 145 159 - -
Cca02g00771 481 SUPERFAMILY Leucine zipper domain 190 232 IPR046347 GO:0003700|GO:0006355
Cca02g00771 481 Coils Coil 209 236 - -
Cca02g00771 481 CDD bZIP_HBP1b-like 190 242 - -
Cca02g00771 481 Pfam bZIP transcription factor 190 229 IPR004827 GO:0003700|GO:0006355
Cca02g00771 481 ProSiteProfiles DOG1 domain profile. 263 477 IPR025422 GO:0006351|GO:0043565
Cca02g00771 481 PANTHER TRANSCRIPTION FACTOR TGA9 80 480 - -
Cca02g00771 481 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 80 480 - -
Cca02g00771 481 Pfam Seed dormancy control 281 355 IPR025422 GO:0006351|GO:0043565
Cca02g00771 481 Gene3D - 189 239 - -
Cca02g00771 481 MobiDBLite consensus disorder prediction 117 142 - -
Cca02g00771 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Cca02g00771 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Cca02g00771 481 MobiDBLite consensus disorder prediction 89 193 - -
Cca02g00771 481 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00771 Cca-Chr2 20097996 20107330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00771 60 481 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.108 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca02g00771 DOG1 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00771 K14431 - gmx:100800059 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00771 02 20097996 20107330 Cca02g00771 02 20097996 20107330 ECH
Cca03g02010 03 40195879 40203348 Cca02g00771 02 20097996 20107330 PCT