Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g00766 | ATGTTCACCATGGATGAATCACCGGCGAACAGGGAGAGCAAAAACGGTGCACAAGGAAACGAAGAGCAAGAAGATGATGACTACATGGGTGACCTTTCTCGCTTTCTTCCTTCCGTGGCTCTTGACCCTCCCAAATCCTCTTCGTCCAAAAAGATTTCTGGCAAGAAAGATCCTCCAGTCAACTCTTCAAAGAGCTGGTTGAAAACTCTTAGCTGGCAAGAGCGGCGAAAACTTGAGAAAGAAAAGAAGCAACAAGAAGAGGATGAGGAAACATTAGCTAAAGTGGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTTCTCAAACAGATGGGTTACATTCCAGGTTCTTCCCTTGGCAAACAGGGCTCAGGAAGGGCCGAACCAGTGGGGCTTGAAATTCGACGATCACGAGCTGGTGTAGGTTTAGAAGATCCCCACAAGGAGAAGAGGAAAAAGGAGGAAATCATGATGGTCACGAAAAGGAGGAAAGAGGAGGACTTAATGAAAGAATTTGGGTCAAGGCAGAAGTCACAGTGGCAGAGTAGAAGAGTTATAATTAATTATAATAAGGCAAAGGCTGCCCTTGACCAATTGGAGAATAGGGAAATTGTGGAGCCACAAaagaatgaggatgatgaagagggtgaagaagaagaagaagaggaagaaataacagaagaGGAATTGCACTATGTTTTGATGAAACTGAGAGATGAATTTAATTATTGCCTCTTTTGTGGATGCCAATATGAATCAAGGGATGCCCTTTTGGCCGACTGCCCTGGAACCAATGAAGATGACCACTAA | 813 | 0.4133 | MFTMDESPANRESKNGAQGNEEQEDDDYMGDLSRFLPSVALDPPKSSSSKKISGKKDPPVNSSKSWLKTLSWQERRKLEKEKKQQEEDEETLAKVEAPIPQSNIGFKLLKQMGYIPGSSLGKQGSGRAEPVGLEIRRSRAGVGLEDPHKEKRKKEEIMMVTKRRKEEDLMKEFGSRQKSQWQSRRVIINYNKAKAALDQLENREIVEPQKNEDDEEGEEEEEEEEITEEELHYVLMKLRDEFNYCLFCGCQYESRDALLADCPGTNEDDH | 270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g00766 | 270 | Coils | Coil | 210 | 230 | - | - | |
| Cca02g00766 | 270 | SMART | G-patch_5 | 99 | 145 | IPR000467 | GO:0003676 | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
| Cca02g00766 | 270 | Pfam | Domain of unknown function (DUF4187) | 218 | 270 | IPR025239 | - | |
| Cca02g00766 | 270 | Pfam | G-patch domain | 101 | 144 | IPR000467 | GO:0003676 | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 211 | 228 | - | - | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Cca02g00766 | 270 | ProSiteProfiles | G-patch domain profile. | 101 | 147 | IPR000467 | GO:0003676 | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 199 | 228 | - | - | |
| Cca02g00766 | 270 | SMART | DUF4187_2 | 216 | 270 | IPR025239 | - | |
| Cca02g00766 | 270 | PANTHER | UNCHARACTERIZED | 24 | 270 | IPR039249 | - | |
| Cca02g00766 | 270 | Coils | Coil | 183 | 203 | - | - | |
| Cca02g00766 | 270 | Coils | Coil | 75 | 95 | - | - | |
| Cca02g00766 | 270 | PANTHER | G PATCH DOMAIN-CONTAINING PROTEIN 11 | 24 | 270 | - | - | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Cca02g00766 | 270 | MobiDBLite | consensus disorder prediction | 70 | 94 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca02g00766 | 93 | 143 | C2H2 Transcription Factor Family | AT5G26610 | 45.098 | 1.09e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g00766 | - | - | gmx:100777380 | 428.713 |