Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00755 ATGAGTTCTGGTTCAGTCACCAAAGCTTCACTCTCTTCCTCCTCATCCCCCAACTCCTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCTGCAGCAACAACAGCTCAAGGGGCCAAAACAAGTGTTGGGGTCtcttcttcttcttcttcAAAGAAGGGAAGGGGTGGTTCAATGCTAGGGGCTCAGCCTCCAAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCACTCCAAGTCCCCTACTGTCATTGTAGCTGGTATTGAGCAAAGGTTTTGCCAACAGTGCAGCAGATTTCACCTGCTTTCTGAATTTGATCAAGGAAAACGAAGCTGCCGCAGGCGACTTGCCGGCCATAATGAGCGCCGACGAAAGCCGCCTCCCAGTTCCTTGTTAACCTCTCGCTATGGCAGAATTTCTTCGCCTATTTTTGACAACAATGCCAGACCTGGTGGCTTTCTGATGGAATTCGCTTCATATCCAAAGCTTACACTGAGAAATTCATTCTCAACACCAAGATCAACCGAGCAAGTTCCCGGGAACCATGCTGCAGCACTTACCTGGCAAACCAGTTCAGACACACCATCTGAATTCTTCCTGCAAGGATCAGGAAGTGGGGGTGGAACAAGCTTCCTTGGTCCGAAACATCCTTTAGTGGAAAGCTACACTGGAGTCACCGACTCGAACTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCCAGGAACACCAACACAAGTGCTGAGCTGAACAACACCTTGTTGAACTTCAATGGGACATCATCCATGGCGCAATTCGCCGTGGCATCTTCTCAAGTTGCAGCCATCCATCAGCTTCCAAACGCCACATCATGGTACTCAAAGACTGTTGGTTCGCCGGAGGCTATCCCTGATCTCGGTCTCGGCCAAATTTCGCCACCTCTCAGCCATCTTCATGGTGAGCTTGATGTGTCACAGCAGGGTAGGAGGCATTACATGGATCTGGGGGAGTCCAGGGCCTGTCAGTCTTCTCACTGGTCTCTTTGA 1104 0.4928 MSSGSVTKASLSSSSSPNSSTESLDGLKFGQKIYFEDVSVAAATTAQGAKTSVGVSSSSSSKKGRGGSMLGAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVIVAGIEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYGRISSPIFDNNARPGGFLMEFASYPKLTLRNSFSTPRSTEQVPGNHAAALTWQTSSDTPSEFFLQGSGSGGGTSFLGPKHPLVESYTGVTDSNCALSLLSSQTWGSRNTNTSAELNNTLLNFNGTSSMAQFAVASSQVAAIHQLPNATSWYSKTVGSPEAIPDLGLGQISPPLSHLHGELDVSQQGRRHYMDLGESRACQSSHWSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00755 367 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00755 367 SUPERFAMILY SBT domain 75 156 IPR036893 GO:0003677|GO:0005634
Cca02g00755 367 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Cca02g00755 367 Pfam SBP domain 77 150 IPR004333 GO:0003677
Cca02g00755 367 MobiDBLite consensus disorder prediction 51 72 - -
Cca02g00755 367 Gene3D - 67 138 IPR036893 GO:0003677|GO:0005634
Cca02g00755 367 MobiDBLite consensus disorder prediction 51 66 - -
Cca02g00755 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 367 - -
Cca02g00755 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 367 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00755 Cca-Chr2 19139106 19144156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00755 27 367 SBP-box Gene Family AT2G42200 43.169 2.26e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca02g00755 SBP 4.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00755 02 19139106 19144156 Cca02g00755 02 19139106 19144156 ECH