Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00754 ATGAACGAGAACGAGATTGATTGTGTAGGACGGATTCGACAAAGCTATGGTCTAAATGGTGATTTGAATTCAGAGTTTGGCAATTGTTCTAGTCAATATTTTGATATTAGACAGACTTCAAATATGAATCAGCCACTTGCCATGGCCAGTGGTGGAGGAGTGGAACAGGAACCACACATAATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAGTCACCAGCTTCAGCCTTTTATGCCACAGAGATCTGCATGGGTTTGCCACAATATGATAGCCAAGTTGGTACTCCTTCTTTGACATCTCAATTCTCAAAGATCAGTGATTTGGAATTCCCTTTGTATCAATCTCCAAGGGAAAGCCTTTTCATGGCTTCATTAGCAAACCAACCTATCCCCAACTTTGATTTGCCAATACCCTTGCAAGCAATGCTCAAATCTCAATTGAATAGTGGCCAATGTTGTGGATCTCCTGAAAAATCTAATAAAATCCCATGTGGGAATTTCCCTGGTAGCAATTTTCTTCCAATTGAACAACCGAAGTTGTTCATTGATGATGCTGCCTCAATTAGTAGAAGCCCTTCAATTCCTTCTATAGGAAATCATGATCAAGCATTTTCTTGTGGCACATACAATTTACCTGCTGCACAGCGTAGCTTCTCTTCTCAGCAAGAGATGCTATCTCCAACAGGTAGCATGTCAACTACTTCTGGAAACTCTACTTCAAATGGACCAACAGCCTCAAGCAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTGAGGCTTATGGAATCAGATGGATTGACCATCTTCCATATTAAAAGTCATTTGCAGAAATATAGAATTGCCAAATACATGCCACAGTCAACTCAAGGGAAATCTGACAAAAGAACCAATGTAGAGAACGTGCATCTCGATGTCAAAACTGGCTTGCAAATAAAAGAGGCACTTCAGTTGCAGCTAGATGTTCAGAGACGTCTTCATGAACAACTAGAGATTCAGAGAAAATTGCAGTTGAGGATTGAAGAGCAAGGCAAGCAGCTGAAAAAGATGTTTGACCAACAGCAGAAGACAAGTGATAACCACTTGAGTACTCAGATTTGA 1176 0.4065 MNENEIDCVGRIRQSYGLNGDLNSEFGNCSSQYFDIRQTSNMNQPLAMASGGGVEQEPHIIGQTKSSSSIISRFESPASAFYATEICMGLPQYDSQVGTPSLTSQFSKISDLEFPLYQSPRESLFMASLANQPIPNFDLPIPLQAMLKSQLNSGQCCGSPEKSNKIPCGNFPGSNFLPIEQPKLFIDDAASISRSPSIPSIGNHDQAFSCGTYNLPAAQRSFSSQQEMLSPTGSMSTTSGNSTSNGPTASSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHIKSHLQKYRIAKYMPQSTQGKSDKRTNVENVHLDVKTGLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKKMFDQQQKTSDNHLSTQI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00754 391 MobiDBLite consensus disorder prediction 221 253 - -
Cca02g00754 391 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Cca02g00754 391 Gene3D - 251 310 - -
Cca02g00754 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Cca02g00754 391 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 41 390 - -
Cca02g00754 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 390 IPR044848 GO:0003700
Cca02g00754 391 Pfam MYB-CC type transfactor, LHEQLE motif 335 382 IPR025756 -
Cca02g00754 391 Coils Coil 338 358 - -
Cca02g00754 391 Pfam Myb-like DNA-binding domain 256 305 IPR001005 -
Cca02g00754 391 SUPERFAMILY Homeodomain-like 250 306 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00754 Cca-Chr2 18968505 18971496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00754 235 379 G2-like Transcription Factor Family AT4G28610 58.784 2.62e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca02g00754 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00754 - - gmx:102668541 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00754 02 18968505 18971496 Cca02g00754 02 18968505 18971496 ECH