Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00746 ATGGCGTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCTAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGACGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCTGAAAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTTAATATTTCTAAGGATATTAAGAAATTCTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTTGATGAGAAGAAGAAAAAGGCACTCGACAAACAGCTTGAGTTTCTTTTAGGGCAAACCGAGAGGTACTCAACAATGTTGGCAGAAAATCTTGTGGATGCTTATAAACCAGCAGAGAATAATTCTGCAGAGCATCACATGAATGTTCAATGCAAAGATGTACATGGAGATATTATTAATGAACCTAAGGAAGCTAATGTTGCCGAGTATCAATCAGATGCAGCTGACAATGATGAAGAATATGATGTGCAATCAGATGATGAATCGGAGGATGATGAGCGAACAATTGAGCTAGATGAGGCTCTTATAACTAAAGAAGAAAGACAAGAGGAATTGGCAGCTTTGTGTGATGAAATGGATCTTCCAATTGAGGAGTTACTCAAGCGTTATTCTGGGGAGAAAGGAGAATCTGCAATGAAAGAAAGTAGTCCTGAGCATAGTGAAGATGATGGGAAAATTGTTAGAGCTGGTGATGAAAATGGAGATGATCTTTTATCTGTCAGCAAAATTGGCACAAGCAACTGCATCATGGTCCCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTATACCAACAAACAATCTACCTCAGAGTGAGGATGGTCAATCTGAAAATCTCAAAGAGGTTCCCAGTGAGACAGTCAATGAAGATTTTGCATATGATTTTACTGATGGAGAGGAAGATGGCGACTTTTTGCTTGGCACTGAAGATAAGGATGATGAAACAACTTTATCTGAGGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGATACAAGTGACAATGAAGATGGGGAACATGAATCTGATTATGCTTCTGCTTTATCAGAGGACCTTTCGAATTCTCCAGTCCATGAAGATGCTGGGCAGAAGGATCCTGTGGTTCCTATGGATGAAGATATCAAGTCTGGTGAGGAACTGGCTGCCGTACAGTCCCAGGAAGAACAATGGGAATCACCTCATGAAAATTTGGAAACAAGAGAAAGTGAACATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAATACTTTCTCCACAACGAATGTGCGTACAAAGTTTCCCTTTCTACTCAAGTACTCTCTCCGTGAGTACCAACATATTGGTTTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAAGGGATTTGGGGACCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCGAAGGAGCGAAAACTTAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTATTGAATTTCAATTCAAAACGGCGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCTCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCCTACTCCGTCGATTAAAGCGAGATGTTGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTGTCAAAGAGACAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACCCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATGTTCAGTTAAGTTCTTCAGTTTGCTCAATTCTTTTGCCTAGTCCCTTTTCAACGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGACCATAGCATGACTGCTTGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGCGACTTTAATCATGGAACGTACTGATATAGCTGACCTAGAAGTAATTAGGCCTGGACTGAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGGGCAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAACGACCCATCTACTCAACAACACTAAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAAGTGAAAGCAAACCCTGTTTCGTACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCTGTTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGAGCACCTACTCCTGTTTGCTGGTGCAGTACTAGTGAGACAAATGGATTTCTGCGCCCATCTTACAAGCAGAAATGCTCTGAGGTTCTGTTACCATTACTGTCACCAATCAGGCCTGCAATTGTACGCCGCCAAGTGTATTTCCCCGATAGGCGGCTTATACAATTTGACTGTGGGAAACTGCAGGAATTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCATCGAGCCCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAAGCTTTCATTAATTTGTATGGCTATACATACATGCGATTAGATGGGTCAACCCAACCGGAGGAGAGACAGACCTTAATGCAGTGCTTTAACACAAACCCCAAATTTTTTCTTTTCATATTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGGGAAGTTCATATTTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCGAAACAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTCGATCCTATGGAACTATTTTCAGATCATAGAACACTTTCAGTAAAAAATATGCCAAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTAGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAGGAGGATGATTATGTAAATGAGGATGATGAGACTGCTGAGTTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGTGGTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCACCACACTCTGTTGCTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATAAGCTTCGCCCTATTGATCGCTATGCCATTCGTTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGATGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTCGTATATGAAAGCTGGGATGCTGATTTTGCAACTATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAAACAGAAAGAAGCTGAGGAAGAAGCTTATGATTCTAAAAAGGCTCATACACCAGGGGATTCAAAGCCCAAATCTAAAAAGAAACCAAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAAATTCTGGCTTGAGACTTGTGAAAGAAGAGTCAGAAGCAGAGCCAATGAACATAGATGATGAGGATGTCGTTGGTCTGGATTTTGTGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGACATAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCTGATTTAGAATCCAACTCATTAGTTGTGCTGGATGAACATGCAGAATCAAAAACTTGTGATAGTTTGGTTGATTTGGAACAGAAAACAACAAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACCCCTATGCCTGTAAAACGGATCTGGGTGATAAAACCAGAAAAATTGAAAAAGGGGAATCATTGGTCCAAAGATTGTTTTCCATCAGCTGATATTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATACGGTCCTAACTGGAGTTTGGTTAGTGAGACGCTTTATGGTATGACTGCTGGTGGATTATACAGGGGGAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCCGAGAACTATTCCAAAAGTATGTCTTGCTCTCAATGGACAATGCTAATCATGAGAAGATCAACAGTCCAGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATACTCTTAGGCGTTGCTTCTGAGCAGGTTAATAGGGAGTTGCTGCTGCAGAAACATTTTTTTGCACTACTTTCATCTGTCTGGAAGGTGGCATCACATATTGAGCGCAGGCAAAATCAATCACCTGCCTGTAATGGTCTCTATTTCGATCAGAGTTTCTTTACTTCTATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGGAAGGATGACATTTGCAAATTTGACCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTAGGCCAGAGAATGACAAAGTCATCCTCTCTATCCAAGGGGAAGACATGCCAGTGAGCACTGATCAGCTGGATATAACTCTGGAGTTCCCGAAAGAGGAGTGTGATGTCCTATCTTCATTTCCATCTGTTATAAATTTATCGATACCTGGCACTGAACCATCACCAACTTTAAATAAGCAAACAGGAGATGGCCTTAAAGTTGGTTTTTCCATTGCTGAGAACCGATTCAGGGAGGCAACAAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCTTCATCTGCATTCCCAACCAATGATGCTAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAAAAGTCTTCTGTATCTGACTCTGCTAAGCCATCTAGGTCAAAGTCCAAAAGAGCTTCAACAGATCCTAGTGAAATGCATCACCATCAGGCTGACTCGATATCCCAGTCAGTATCACCACTTAAGGATCTGAGATTCGATCTCACTTCATCCACTGCCGATGAAGTTGGAATTGATGGTATGGATGGCAATTTGCTCTTTCGCTTGAATGGGGAAAGTTCAGAGGAAATGTGTAGTGTGGAAATGTTCCCACATGATTATGATGCTGGTTTAATTTCAGACCTTGATGATTGTACAGCATTCTCTGAATTTACTGACATTAGATAA 6132 0.4101 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDIKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAYKPAENNSAEHHMNVQCKDVHGDIINEPKEANVAEYQSDAADNDEEYDVQSDDESEDDERTIELDEALITKEERQEELAALCDEMDLPIEELLKRYSGEKGESAMKESSPEHSEDDGKIVRAGDENGDDLLSVSKIGTSNCIMVPGRRCDESNGDVAIPTNNLPQSEDGQSENLKEVPSETVNEDFAYDFTDGEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDTSDNEDGEHESDYASALSEDLSNSPVHEDAGQKDPVVPMDEDIKSGEELAAVQSQEEQWESPHENLETRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDVQLSSSVCSILLPSPFSTVDLRGLGLLFTHLDHSMTAWESDEVQAIETPATLIMERTDIADLEVIRPGLKCQKKLQGTNIFEEIQRAIWEERLKQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTLRHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPTPVCWCSTSETNGFLRPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQCFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSDHRTLSVKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDDYVNEDDETAELGESVSNLNKENVVMLNGSDHKEDRPPHSVAVKEDDADVLADVKQMAAAAAAAGQAISAFENKLRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKDEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEAKQKEAEEEAYDSKKAHTPGDSKPKSKKKPKKAKFKSLKKGSLNSGLRLVKEESEAEPMNIDDEDVVGLDFVSPNSTMQKKRKKSKLTTDGEEEKRHKKSKKSKRDPPDIYASDLESNSLVVLDEHAESKTCDSLVDLEQKTTSRSKMGGKISITPMPVKRIWVIKPEKLKKGNHWSKDCFPSADIWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGLYRGRYRHPVHCCERFRELFQKYVLLSMDNANHEKINSPGSGKALLKVTEDNIRILLGVASEQVNRELLLQKHFFALLSSVWKVASHIERRQNQSPACNGLYFDQSFFTSIGQPSQNSLKKSSGRMTFANLTQSKKLVAAALDDTTTRPENDKVILSIQGEDMPVSTDQLDITLEFPKEECDVLSSFPSVINLSIPGTEPSPTLNKQTGDGLKVGFSIAENRFREATRVCEEDSSGWASSAFPTNDARSRPGSRIQSSGKQKSSVSDSAKPSRSKSKRASTDPSEMHHHQADSISQSVSPLKDLRFDLTSSTADEVGIDGMDGNLLFRLNGESSEEMCSVEMFPHDYDAGLISDLDDCTAFSEFTDIR 2043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00746 2043 MobiDBLite consensus disorder prediction 307 329 - -
Cca02g00746 2043 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1459 1492 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1476 1492 - -
Cca02g00746 2043 SUPERFAMILY Homeodomain-like 1640 1697 IPR009057 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1909 1971 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1 33 - -
Cca02g00746 2043 Gene3D - 1027 1273 IPR027417 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 248 277 - -
Cca02g00746 2043 Pfam SNF2-related domain 529 801 IPR000330 GO:0005524|GO:0140658
Cca02g00746 2043 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1207 IPR001650 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 191 212 - -
Cca02g00746 2043 PANTHER HELICASE SRCAP-RELATED 3 1956 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1538 1566 - -
Cca02g00746 2043 PANTHER HELICASE SRCAP 3 1956 - -
Cca02g00746 2043 Coils Coil 1270 1290 - -
Cca02g00746 2043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 734 IPR027417 -
Cca02g00746 2043 SMART ultradead3 508 701 IPR014001 -
Cca02g00746 2043 CDD SF2_C_SNF 1042 1177 - -
Cca02g00746 2043 SMART bromneu2 23 94 IPR014012 -
Cca02g00746 2043 CDD DEXQc_SRCAP 512 734 - -
Cca02g00746 2043 Pfam Helicase conserved C-terminal domain 1056 1166 IPR001650 -
Cca02g00746 2043 Coils Coil 1449 1469 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1459 1475 - -
Cca02g00746 2043 ProSiteProfiles Myb-like domain profile. 1642 1695 IPR001005 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 248 283 - -
Cca02g00746 2043 Gene3D - 758 821 - -
Cca02g00746 2043 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 689 IPR014001 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1525 1567 - -
Cca02g00746 2043 Gene3D - 481 757 IPR038718 -
Cca02g00746 2043 Coils Coil 216 236 - -
Cca02g00746 2043 SMART helicmild6 1083 1166 IPR001650 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1909 1945 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 304 370 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 398 442 - -
Cca02g00746 2043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1237 IPR027417 -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 339 364 - -
Cca02g00746 2043 Gene3D - 1638 1699 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 1946 1964 - -
Cca02g00746 2043 Coils Coil 1394 1414 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 187 212 - -
Cca02g00746 2043 MobiDBLite consensus disorder prediction 398 418 - -
Cca02g00746 2043 Pfam HSA domain 27 93 IPR014012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00746 Cca-Chr2 18458858 18480817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00746 532 804 RAD5 or RAD16-like Gene Family AT5G43530 30.124 1.63e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g00746 SNF2_N 6.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00746 - - gmx:100794898 3592.36