Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00730 ATGGAACTGGCTTTGAGCTTAGGAGACACGTCGAAGTCTTTCACTTTACCCACTAAAGAAGCTTCAGGGTTCTGTGTGGCACCGAGTTTCACTGTGGGGAGAGGCTCTGAAGAGAAAAAAAGTGATGATGAGAGAAGGGGTTCTTCAGATCCACCGCTTCAACTTGACCTTCTTCCTTTCACTCCGGTTCAAAGATCCCAACCTCCTTCTCAGCTTCGAATCCCTTGGCTCACCCAAGCATGTGGGGCTGCGAGGGTGTTGGATGTGAACCTTTTTCcggcggcggcggaggacggcgacgacggGACATCGTTGTCGTCGCCGAACAGCGCGGTGTCGCCGTTTCAGATGGATTTCTGCACAAGGAACGGTAATGCGGAGTTTGGAGGAAGAAATAAGAGAGAGCAACACGAGGGTGAGGGTTGTAGAGTGAGTGATGATGAAGAAAATGGTTCAACACGGAAGAAACTCAGACTCTCTAAAGAACAATCAGCTTTTCTAGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCCAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCGACCTCGGCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACAGAAGAGAATAGAAGGTTGCAAAAGGAGCTTCAAGAACTGAGAGCGTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACTCTCACAATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACCACTAACCAAACTTCCAACATTAACAACGGTTCACAAATCCCAGTGGAGTTGTCTCTCAGCAAGCCCAGAATATTGCCCTTCCCTACTGGCCAGGCCCAGGCGCAGGCCCATCAGATTGCCTCTTCATGA 948 0.462 MELALSLGDTSKSFTLPTKEASGFCVAPSFTVGRGSEEKKSDDERRGSSDPPLQLDLLPFTPVQRSQPPSQLRIPWLTQACGAARVLDVNLFPAAAEDGDDGTSLSSPNSAVSPFQMDFCTRNGNAEFGGRNKREQHEGEGCRVSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSNINNGSQIPVELSLSKPRILPFPTGQAQAQAHQIASS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00730 315 CDD homeodomain 154 211 IPR001356 GO:0003677
Cca02g00730 315 Pfam Homeodomain 154 208 IPR001356 GO:0003677
Cca02g00730 315 SMART halz 210 253 IPR003106 GO:0006355|GO:0043565
Cca02g00730 315 MobiDBLite consensus disorder prediction 127 155 - -
Cca02g00730 315 ProSiteProfiles 'Homeobox' domain profile. 150 210 IPR001356 GO:0003677
Cca02g00730 315 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 302 - -
Cca02g00730 315 Gene3D - 158 208 - -
Cca02g00730 315 PANTHER - 2 302 - -
Cca02g00730 315 Coils Coil 216 246 - -
Cca02g00730 315 MobiDBLite consensus disorder prediction 128 155 - -
Cca02g00730 315 SUPERFAMILY Homeodomain-like 147 211 IPR009057 -
Cca02g00730 315 SMART HOX_1 152 214 IPR001356 GO:0003677
Cca02g00730 315 MobiDBLite consensus disorder prediction 27 68 - -
Cca02g00730 315 Pfam Homeobox associated leucine zipper 210 244 IPR003106 GO:0006355|GO:0043565
Cca02g00730 315 CDD bZIP 203 242 - -
Cca02g00730 315 MobiDBLite consensus disorder prediction 35 50 - -
Cca02g00730 315 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00730 Cca-Chr2 17535565 17537017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00730 146 300 Homeobox Transcription Factor Family AT4G37790 67.949 3.74e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca02g00730 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00730 K09338 - gmx:100779138 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00730 02 17535565 17537017 Cca02g00730 02 17535565 17537017 ECH
Cca03g02039 03 40567960 40569291 Cca02g00730 02 17535565 17537017 PCT