Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00725 ATGTTGTGTTGCGGAGGTGCAGAAGAGGATTTTGGCATTCCACCTACAAACCAATATAGTACATCACCTAGAAAGGGTAATACATATGGTGGTGGAGGAGGTGGTGATAGAGGAGAGCCAAGGGGAAACCCTGCCAAAAGTGGTGCTCCACAGAAAGAGTTGCCAATTGAAATACCAGCTATTTCATTGGATGAATTAAATCGATTAACAGATAACTTTGGTACAAAGGCATTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTATGCAACGTTAAGTGATGGTATGGATGTTGCAATCAAGAAGCTAGATACTAGTTCTTCGCCAGAACCTGACTCTGACTTTGCATCACAATTATCAGTTGTTTCAAGATTGAAGAGTGACCATTTTGTGGAGTTAATGGGATATTGTCTAGAGGAAAATAACAGAATTTTGGTTTATCAACATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGAAAAGGAGTGCAAGGGGCTGAACCTGGTCCAGTTTTAAATTGGAACCAAAGAGTAAAAATTGCATTTGGTGCGGCAAAGGGACTTGAGTTTCTTCATGAAAAGGTTCAACCTCCGATAGTTCATCGAGACATTAGATCTAGCAATGTCTTGCTCTTTGATGACTACGAATCCAAGATTGCAGATTTCAACTTGACAAATCAGTCTTCTGACACTGCAGCTCGACTACATTCAACAAGAGTTTTAGGAACATTTGGTTATCATGCTCCAGAGTATGCCATGACTGGGCAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGGGTTGTGCTTTTGGAACTTTTAACAGGAAGAAAACCAGTGGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTAAGTGAAGACAAAGTGAAACAATGTGTGGATCCTAAACTAAATAATGACTACCCACCTAAGGCAATTGCTAAGTTAGCAGCAGTTGCAGCGCTTTGTGTGCAGTATGAAGCTGATTTTAGGCCAAATATGACTATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCAAAACCGGTTGGCCCTGACCCTAGTGCTTGA 1101 0.4051 MLCCGGAEEDFGIPPTNQYSTSPRKGNTYGGGGGGDRGEPRGNPAKSGAPQKELPIEIPAISLDELNRLTDNFGTKALIGEGSYGRVYYATLSDGMDVAIKKLDTSSSPEPDSDFASQLSVVSRLKSDHFVELMGYCLEENNRILVYQHASLGSLHDILHGRKGVQGAEPGPVLNWNQRVKIAFGAAKGLEFLHEKVQPPIVHRDIRSSNVLLFDDYESKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPVGPDPSA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00725 366 Gene3D Transferase(Phosphotransferase) domain 1 151 360 - -
Cca02g00725 366 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Cca02g00725 366 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Cca02g00725 366 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00725 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Cca02g00725 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 364 - -
Cca02g00725 366 MobiDBLite consensus disorder prediction 1 53 - -
Cca02g00725 366 Pfam Protein tyrosine and serine/threonine kinase 77 351 IPR001245 GO:0004672|GO:0006468
Cca02g00725 366 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Cca02g00725 366 PANTHER OS03G0226300 PROTEIN 1 364 - -
Cca02g00725 366 SUPERFAMILY Protein kinase-like (PK-like) 50 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00725 Cca-Chr2 17382959 17386023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00725 58 358 Receptor kinase-like Gene Family AT3G58690 45.033 3.85e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca02g00725 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00725 - - gmx:100777194 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00725 02 17382959 17386023 Cca02g00725 02 17382959 17386023 ECH
Cca03g02047 03 40655169 40657434 Cca02g00725 02 17382959 17386023 PCT