Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00716 ATGGacaaaacaacaataacaacaacaacaGAGAGAGAAACCCACGACTTCATGAACGTCGACTCCTTCTCCCAGCTCCCATTCATCCGCCCGGCCCCTCCAGTCAAGGAGAAGCCGGGCATTCGTCTCTTCGGCATCGAATTCGCCGGCGGAAACGGCGACTCTGACTCAGTCGTCGTCTCCGCGGACGAGTCCGAGTCGGGTGAGACGACTACcaacaataataataataacaacaacaacCTTACCTCGTTCGACTCGAACAAGGACGATGTTGTTGTGACCACCACTACCACTGTTGTCGACGCCAGCGGCGAGAGCAGCCGGCGCTTCGAGTGCCACTACTGCTGCCGAAACTTCCCCACCTCGCAAGCCCTCGGCGGCCACCAAAACGCGCACAAACGCGAACGGCAACACGCGAAACGCGCGCACCTTCAGTCGACGATGGTGCACGGTAGCACCTACTCCGACGCGCACCATGTCTACAACCTCATGAACTACCGCTTCGGTTCCGCTCCAACGACAGCAATGCCTTATCCAACGTGGAGCAACGGCAGCAGCACCACCACCGCCGCCACCAACGCGACGAGGTTCTATGGAACGACGGCGTTTTCGCACCACCAAAACCAACAGCAACAACCGATTAATGGAAGCCCTTTAGCGTTTTGGCGAATCCCTGGTAACAACCCTAGTTTCAGCCACGAACGGTCGTTGCCGCCTTTGTTCGCGAGCGAGGAAATGACGAACGTGAGAGCCTCGCAGGTTGTCGGAGCCTCGGGCTCGCAAAACCGCTACGTGTATGACTCCAAACGCGCGAGTGTCCACGACCATGTGAGTTTGGATCTTCATCTGTAG 855 0.5485 MDKTTITTTTERETHDFMNVDSFSQLPFIRPAPPVKEKPGIRLFGIEFAGGNGDSDSVVVSADESESGETTTNNNNNNNNNLTSFDSNKDDVVVTTTTTVVDASGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSTMVHGSTYSDAHHVYNLMNYRFGSAPTTAMPYPTWSNGSSTTTAATNATRFYGTTAFSHHQNQQQQPINGSPLAFWRIPGNNPSFSHERSLPPLFASEEMTNVRASQVVGASGSQNRYVYDSKRASVHDHVSLDLHL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00716 284 Gene3D Classic Zinc Finger 82 163 - -
Cca02g00716 284 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Cca02g00716 284 MobiDBLite consensus disorder prediction 54 87 - -
Cca02g00716 284 SUPERFAMILY beta-beta-alpha zinc fingers 108 139 IPR036236 -
Cca02g00716 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Cca02g00716 284 PANTHER ZINC FINGER PROTEIN GIS 1 284 - -
Cca02g00716 284 MobiDBLite consensus disorder prediction 58 87 - -
Cca02g00716 284 PANTHER ZINC FINGER PROTEIN GIS 1 284 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00716 Cca-Chr2 16932343 16933672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00716 8 284 C2H2 Transcription Factor Family AT2G41940 39.446 4.42e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00716 - - vun:114190818 422.935