Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00713 ATGAGAACTTCATGGGCGGATTCTGCTGACAATTCAGCCAATGGTTCTGGCAATTCCAATGCCTGGGCTCCCCGGGCAGCATATGTGCCTCCGCATCTTCGCAACCGGACAATGTCGTCTGAGGCTCcggcggctgcggcggcggggacagcggtggcagcTTCTTTGCCGGCGAATGACCGGGTGAATCATGGTGGTTCAATTCCCCATCATGGGGGTTACTTTAAAGCGGATAACGGGCGGCAGGGTTATGGTTCTGGTTTTCAGAgtggtggtggtggtggctggAATGGTAGAGGGGCGGGGAGGGACCGAGGGAGGCGTGAGGTAAACCCTTTTGAGAATGATGAAGCTGAGGAACAATCTTTAGGTGAACAAGAGAACACGGGGATTAACTTTGAGGCCTATGATGATATCCCTGTGGAGACTAGTGGGGAAAATGTGCCCCCTCCTGTGAACACATTTGCTGAAATAGATTTGGGTGAGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCGACCCCAGTTCAGAGGTATGCCATTCCGATTTCCCTTGCGGGGCGAGATTTGATGGCCTGTGCTCAGACTGGGTCTGGGAAAACAGCTGCCTTTTGCTTCCCTATTATAAGTGGGATCATGAGGGAGCAGTATGTTCAAAGACCGCGCGTAGCACGAACTGCTTTTCCGCTGGCGCTCATCCTCTCCCCTACACGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACAGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTACGGGAGCTCGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCCAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTGCTAGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAGTATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAAAGGGAAAATGGAATTTCTGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCAGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAATTACACCAATTCTAGTGGCAACGGATGTTGCAGCCCGAGGTCTTGACATCCCACGTGTAGCACATGTGGTTAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGCAAAATGGGATTAGCAACGGCCTTCTTCAATGAAAGCAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAGGAGGCAAATCAAGAAGTACCTGCCTGGCTCACCCGATATGCGGCAAGGGCTGCATACGGTGGTGGCAACAGAAATAGAAGGTCAGGGGGATCCCGTTTTGGTGGCCGCGATTTTAGGAGAGACAACTCCACTAATAAAGGAACAGATTACTATGGTGGAAGTGGTGGCGGTGGATATGGCAATTATGGTGGAGGCTATGGTCAAGACTTTAATGGTGAAAAGCTGTACTCAACCATGTCTTGCCTGAATCCATGCATTCCCTTGTCCTTACTGCATGAAATCTTTTATCATAGGAAAGATTTACAATTGGCTTGGTTTTGCTGGTTTAGTCAAATAAGGTGGAGAAATGCTGCATTTGGAGAAGACAAAATCTATATTACTGAGTTTAAATGGAATGGTTTCACATGGAGTAGAACTAAGAACAACAAAAACGAAATGGGACCTCTTACACATAAAGGCCTTCCCTTGAAGCAAACAATAACATTCCCCAAGTTGCGATTCCCCAAGAGAAAGTTAGTAAGCTTCTTGGTGATTCAACTTGTCACTCAGCTGAATTAA 2154 0.4508 MRTSWADSADNSANGSGNSNAWAPRAAYVPPHLRNRTMSSEAPAAAAAGTAVAASLPANDRVNHGGSIPHHGGYFKADNGRQGYGSGFQSGGGGGWNGRGAGRDRGRREVNPFENDEAEEQSLGEQENTGINFEAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGISGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGITPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARAAYGGGNRNRRSGGSRFGGRDFRRDNSTNKGTDYYGGSGGGGYGNYGGGYGQDFNGEKLYSTMSCLNPCIPLSLLHEIFYHRKDLQLAWFCWFSQIRWRNAAFGEDKIYITEFKWNGFTWSRTKNNKNEMGPLTHKGLPLKQTITFPKLRFPKRKLVSFLVIQLVTQLN 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00713 717 MobiDBLite consensus disorder prediction 101 115 - -
Cca02g00713 717 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Cca02g00713 717 SMART helicmild6 426 507 IPR001650 -
Cca02g00713 717 MobiDBLite consensus disorder prediction 556 582 - -
Cca02g00713 717 Gene3D - 108 370 IPR027417 -
Cca02g00713 717 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00713 717 Pfam DEAD/DEAH box helicase 177 357 IPR011545 GO:0003676|GO:0005524
Cca02g00713 717 MobiDBLite consensus disorder prediction 62 125 - -
Cca02g00713 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 368 IPR014001 -
Cca02g00713 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 522 IPR027417 -
Cca02g00713 717 CDD SF2_C_DEAD 380 516 - -
Cca02g00713 717 MobiDBLite consensus disorder prediction 562 576 - -
Cca02g00713 717 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 42 582 - -
Cca02g00713 717 Gene3D - 371 550 IPR027417 -
Cca02g00713 717 MobiDBLite consensus disorder prediction 1 21 - -
Cca02g00713 717 CDD DEADc_DDX3_DDX4 154 374 IPR044763 GO:0003724|GO:0005524
Cca02g00713 717 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Cca02g00713 717 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 582 - -
Cca02g00713 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 546 IPR001650 -
Cca02g00713 717 SMART ultradead3 172 383 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00713 Cca-Chr2 16771572 16780191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00713 151 539 Eukaryotic Initiation Factors Gene Family AT3G19760 31.026 6.29e-59 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00713 K11594 - gmx:100818326 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00713 02 16771572 16780191 Cca02g00713 02 16771572 16780191 ECH