Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00709 ATGAAAGCATTGAGAACCCTAAGAAGGACTCTCTATTCTCCCACACCCGTTTTCCGCGCCTTTTTCTCggcccaggcccaggcccaggcccaggcccaCGAGGATCCCACCACCTCCGCCGCGGACTCCGACGCCGTCTTCGACAGCTCCCGCTACGCCCTCCACCATGACACCAAGCCCACGCCCGAGCCCGGGCCCACGTGGGACGAGAAGTACCGGGCCCGCGCGGACCGAGTGGTGTTCGGGGAAGACGGCCCCAAGGGGAAGCTGCGGCTGAaggaggaggaggacgagaggcggaggaggGCCCTCGCGAAGGCCCTGCTGGAGGCCGCCGTGGACGACGGCGATGACGAGGAGGCAGAAGGGAAAGGCGCGGCGGTGGTCAACGAGGAAGACCAGAAATCCTTGGCCGTTGGAATCATCGGTGCCCCCAATGCCGGCAAGTCTGCCCTCACTAATTATATGGTTGGGACAAAGGTGGCAGCGGTTTCACGGAAGACAAATACTACAACTCATGAAGTTGTGGGAGTGTTGACAAAAGGAGACACCCAAATTGTGAGTGACTTaatccatcctttgttatcatcaaaactctcatactccagggctgagttgattcactactccatgaatctcaacactgtcttcGTCACCTCCACCTCTCTAGGATCGTCGTCCCTAGTCTCCTCCCGCCACTGCAACAAAGGCGTTAAGAAGGAGGTCATGTGCTCCTCCCCCAAGCTCACTTCCACGACCGAATCCATGGTCAAGTTCATCAACTATGCCATCTGCCTCACGGAATTTGTCATTAGAGACAAAATCCAAGTGCTGCCTCAGTGTGGACATGGATTCCATGTGGCCTACACATTGAAGCTTGGCTCAAATCGCATTCCTCTTATCCTTCCTACCGCAGTTCAACGACCCTGGGAAGAAGATCCATTTACCATGAGTGAGGAAGTTATGAAGATGATAGCATTAGAAGTTGTGCGTGAAAGTTTATCAATTCATGAAATTCCATATGATGTTGAACAGCGATTGATTGACTGGAAAGAGTTACGAGATGGTTCTCTTAGGATTGAGCAACATTTCATCACTAACAAATTAAGCCAACGCAAGATTCTTGTGGGGAAGAATGGCTCAAAAATTGGGAGAATAGGAATTGAAGAAAATGAAGATCTAAGTTCGCAAAGGAACAAAACCGTGCTAGATGTCATGGTGATCATGGTGAGAATCATCGGTATGGTGACACAGGTTGAGTTCATTGGTGATCTTGCAAGCAAACTTTTGTGCCATTTACCGTTTAGTTGCCTGTGA 1317 0.4563 MKALRTLRRTLYSPTPVFRAFFSAQAQAQAQAHEDPTTSAADSDAVFDSSRYALHHDTKPTPEPGPTWDEKYRARADRVVFGEDGPKGKLRLKEEEDERRRRALAKALLEAAVDDGDDEEAEGKGAAVVNEEDQKSLAVGIIGAPNAGKSALTNYMVGTKVAAVSRKTNTTTHEVVGVLTKGDTQIVSDLIHPLLSSKLSYSRAELIHYSMNLNTVFVTSTSLGSSSLVSSRHCNKGVKKEVMCSSPKLTSTTESMVKFINYAICLTEFVIRDKIQVLPQCGHGFHVAYTLKLGSNRIPLILPTAVQRPWEEDPFTMSEEVMKMIALEVVRESLSIHEIPYDVEQRLIDWKELRDGSLRIEQHFITNKLSQRKILVGKNGSKIGRIGIEENEDLSSQRNKTVLDVMVIMVRIIGMVTQVEFIGDLASKLLCHLPFSCL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00709 438 PANTHER GTPASE ERA, MITOCHONDRIAL 28 187 - -
Cca02g00709 438 PANTHER GTPASE ERA, MITOCHONDRIAL 302 402 - -
Cca02g00709 438 Gene3D - 318 412 IPR015946 -
Cca02g00709 438 Pfam 50S ribosome-binding GTPase 139 186 IPR006073 GO:0005525
Cca02g00709 438 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 317 403 IPR009019 GO:0003723
Cca02g00709 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 184 IPR027417 -
Cca02g00709 438 Gene3D - 131 188 IPR027417 -
Cca02g00709 438 PANTHER GTPASE ERA 302 402 IPR005662 GO:0003723|GO:0005525
Cca02g00709 438 PANTHER GTPASE ERA 28 187 IPR005662 GO:0003723|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00709 Cca-Chr2 16586895 16608773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00709 235 288 C3H Transcription Factor Family AT1G20823 60.714 1.52e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00709 K03595 - qsu:111993282 279.256