Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00706 atgaatctcaacactgtcttcGTCACCTCCACCTCTCTAGGATCGTCGTCCCTAGTCTCCTCCCGCCACTGCAACAAAGGCGTTAAGAAGGAGGTCATGTGCTCCTCCCCCAAGCTCACTTCCACGACCGAATCCATGGTCAAGTTCATCAACTATGCCATCTGCCTCACGGAATTTGTCATTAGAGACAAAATCCAAGTGCTGCCTCAGTGTGGACATGGATTCCATGTGGCCTACACATTGAAGCTTGGCTCAAATCGCATTCCTCTTATCCTTCCTACCGTTAGATTCTCATTGTTTCCCGCTACGACAAGTGCGGTGGGATCCCTGCTCCAGCAACCACCAGCTCCACCTCTACATCGGAATTCGAGGCCAGATGTGTACCTTAACACCCACTATTCCAAATCTCACGATCCATACCATAGCCAAACGAAGCTATAG 441 0.4807 MNLNTVFVTSTSLGSSSLVSSRHCNKGVKKEVMCSSPKLTSTTESMVKFINYAICLTEFVIRDKIQVLPQCGHGFHVAYTLKLGSNRIPLILPTVRFSLFPATTSAVGSLLQQPPAPPLHRNSRPDVYLNTHYSKSHDPYHSQTKL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00706 146 Pfam RING-like zinc finger 53 77 IPR001841 -
Cca02g00706 146 PANTHER RING-H2 FINGER PROTEIN ATL8 16 78 - -
Cca02g00706 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 86 IPR013083 -
Cca02g00706 146 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00706 Cca-Chr2 16564813 16565253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00706 25 78 C3H Transcription Factor Family AT1G20823 60.714 3.17e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00706 - - ccaj:109792263 283.108