Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00701 ATGAGGGGAAGAAGCTACAGTTACAGCCCATCGCCTCCAAGGCGTTACGGTCGACGAAGGCGCAGTCCTAGCCCTAGAGGTCGTTACAGAGGACGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGGAACCTCCACAGAGATTGCAGGCCGGATGATCTGCATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGACGTTTATCTGCCTCGAGATTATTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGATCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCAAATTTTTCTTGGTCGTGAGATAACTGTAGTGTTTGCAGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACGTAGGAGAGACCGATCATATGATTACAGGCGATCTCGTAGTCCAGACTATTCACCTTCTCCAAGACAAAGGCGACATTACAGATCAATCTCACCAAGGGACAGAAGATATAGGGATCGGTCATACTCTAGATCACCTTATGGATCAagaagccgcagcagaagcaggagttacagcaggagcttgagccggagTCCAGACTACTCTAGGTGA 597 0.4322 MRGRSYSYSPSPPRRYGRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRPDDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQIFLGREITVVFAEENRKKPAEMRARERRRDRSYDYRRSRSPDYSPSPRQRRHYRSISPRDRRYRDRSYSRSPYGSRSRSRSRSYSRSLSRSPDYSR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00701 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Cca02g00701 198 MobiDBLite consensus disorder prediction 1 36 - -
Cca02g00701 198 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Cca02g00701 198 Gene3D - 3 130 IPR012677 -
Cca02g00701 198 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 191 - -
Cca02g00701 198 SMART rrm1_1 39 112 IPR000504 GO:0003723
Cca02g00701 198 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 191 - -
Cca02g00701 198 MobiDBLite consensus disorder prediction 174 198 - -
Cca02g00701 198 MobiDBLite consensus disorder prediction 119 198 - -
Cca02g00701 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Cca02g00701 198 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00701 Cca-Chr2 16513284 16516552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00701 38 127 Eukaryotic Initiation Factors Gene Family AT4G34110 32.222 2.05e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00701 K12900 - gmx:100816913 210.305