Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00693 ATGTACCCCTTCCATGGAGAGAGTAGCCGCTACCCTAGCTTCCTCTTCAGCTTTTCTAACTTCAGGATGGAGTCCCAGGTGAAGCATGCTATTGTTGTGAAGGTCATGGGTCGTACAGGGTCTAGAGGGCAGGTGACTCAGGATTCAGTGAAGCAATGCTGTTTTTGTGACACACGAGACGGGAATATCATGAAATGGAAATCACGAAGGCCCAAGTCCAAGGAGAAACAAAAGACTAATAACAGATATAAGACCAGAGGCATAATGGGCCGGGCCCAACGATTTAACTTAGGCTGCTTCTACCTCGCACCCTCTGTGCCGCACCCACCAACACCACCAACCATGGCTGACATCGTTCAAGAAGCTCCTGCCATCGTTCCAGATCCCACCCAAATCGACGTCAAGCTCTTCAACCGTTGGAGCTTCGACGATGTTCAGGTTAATGATATTTCTCTGGCTGATTATATTGGAGTGGTGGCGTCCAAGCATGCTACGTATGTTCCTCACACTGCTGGAAGGTACTCAGTGAAGCGGTTCAGGAAAGCTCAGTGCCCCATTGTTGAGAGGCTTACAAACTCTCTCATGATGCACGGAAGGAACAACGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCCATGGAGATCATTCATTTGCTCACTGACCAGAACCCAATTCAGGTCATCGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTTGTGAGGAGACAGGCTGTGGATATCTCACCCCTCCGACGTGTTAATCAGGCTATCTATCTTCTAACAACCGGTGCTCGTGAAGCTGCTTTCAGGAATATCAAGACCATTGCTGAATGCTTGGCTGATGAGCTTATTAATGCAGCAAAGGGTTCATCCAACAGTTATGCCATCAAGAAAAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCGTTAA 969 0.4788 MYPFHGESSRYPSFLFSFSNFRMESQVKHAIVVKVMGRTGSRGQVTQDSVKQCCFCDTRDGNIMKWKSRRPKSKEKQKTNNRYKTRGIMGRAQRFNLGCFYLAPSVPHPPTPPTMADIVQEAPAIVPDPTQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00693 322 ProSitePatterns Ribosomal protein S7 signature. 188 214 IPR020606 GO:0003723|GO:0003735|GO:0006412
Cca02g00693 322 TIGRFAM uS7_euk_arch: ribosomal protein uS7 134 322 IPR005716 GO:0003735|GO:0006412|GO:0015935
Cca02g00693 322 Pfam Ribosomal protein S7p/S5e 176 322 IPR023798 -
Cca02g00693 322 PANTHER RIBOSOMAL PROTEIN S7 119 322 IPR000235 GO:0006412
Cca02g00693 322 Gene3D Ribosomal protein S7 domain 117 322 IPR036823 -
Cca02g00693 322 CDD uS7_Eukaryote 135 322 IPR005716 GO:0003735|GO:0006412|GO:0015935
Cca02g00693 322 Gene3D - 20 65 IPR012340 -
Cca02g00693 322 PANTHER 40S RIBOSOMAL PROTEIN S5 119 322 - -
Cca02g00693 322 SUPERFAMILY Ribosomal protein S7 135 322 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00693 Cca-Chr2 16328359 16336441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00693 133 322 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.632 1.58e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00693 K02989 - gmx:100305898 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00693 02 16328359 16336441 Cca02g00693 02 16328359 16336441 ECH