Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00679 ATGACATCAACTGAGGAGAAGGATATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGGCCCTCAGGAAGTGGAAAGACAACTCTTTTAAACTTACTTGGAGGCAGGTTAAGCCAACCAATCACTAGTGGTTCTATCACTTACAATGACCAACCTTATTCCAAGTTCCTTAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACCTAACTGTGAAAGAGACATTGACATACGCAGCCAGGCTAAGACTACCAAAGACATTCACAAAGGAGCAAAAGGAAAAACGAGCTTTAGATGTAATCTATGAGCTTGGCCTGGAGAGGTGCCAAGACACTATGATTGGAGGTTCCTTTGTCCGTGGAGTATCTGGTGGTGAGAGGAAAAGGGTTTGTATTGGCAATGAGATCATAATCAACCCTTCTCTTCTTTTTCTTGATGAGCCAACATCTGGTTTGGATTCTACAACAGCATTAAGGATCGTTCAGATGCTACAAGACATTGCAGAGGCTGGGAAAACAGTGGTGACAACAATCCACCAACCATCAAGCAGGCTCTTCCACAAATTTGACAAGTTGATCCTTCTTGGTAAAGGGAGCTTGCTTTACTTCGGAAAAGCATCAGAAGCAATGAATTACTTCCAGACTATAGGATGTTCACCACTAATTTCTATGAACCCAGCAGAGTTTTTGTTAGACCTTGCTAATGGAAACATAAATGATGTTTCCCTACCTTCAGAGTTGGAAGATAGAGTTCAAATGGGATATGCAGAAGCAGAAACACAAAGTGGGAAACCATCACCAGCAGTTGTACATGAGTATCTTGTGGAGGCATATGAAACTCGAGTAGCAGAAACAGAAAAGAAAAGAATAATGGTTCCTATACCCCTTGATGATGCAGTGAAGACTAAAGTGTGTTCTCATAAGAGACAATGGGGAGCAAGTTGGGATGAACAATATTCCATACTGTTTTGGAGAGGAATCAAAGAAAGGAGGCATGACTACTTTAGCTGGTTGAGAATCACTCAAGTCTTATCTACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATACTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGACTGCTATTCTTTATTGCTGTTTTCTGGGGATTTTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGAGTAAGGAGAGAGCAGCAGATATGTACAGACTAAGTGCATACTTCTTGGCTAGAACAACAAGTGACCTTCCACTAGACCTCATTTTACCAGTGCTTTTTCTACTTGTTGTTTATTTCATGGCTGGTCTCAGACTCAGTGTTGCCCCCTTCTTCCTCACCATTCTTACTGTTTTCCTCTGCATTGTGGCTGCTCAGGGACTTGGACTTGCTATTGGGGCCACACTAATGGACTTGAAAAGAGCAACAACCTTGGCTTCAGTAACTGTCATGACCTTCATGCTTGCTGGAGGATTTTTTGTACAGAGAGTTCCTGTATTCTTTTCTTGGATCCGATACATGTCATTCAATTACCACACCTACAAACTTCTGCTGAAGGTGCAATATGAACACATATCTCATACCATAAACGGGATCAGAATCGATAGTGGTGCATCAGAAGTAGCTGCTCTAATAGCCATGGTTTTTGGCTACCGTTTCTTGGCATATCTCTCATTAAGGCGAATGAAACTTCAATCAGGAGCTTAA 1752 0.4195 MTSTEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSQPITSGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQTIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVQMGYAEAETQSGKPSPAVVHEYLVEAYETRVAETEKKRIMVPIPLDDAVKTKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPVFFSWIRYMSFNYHTYKLLLKVQYEHISHTINGIRIDSGASEVAALIAMVFGYRFLAYLSLRRMKLQSGA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00679 583 Pfam ABC-2 type transporter 328 537 IPR013525 GO:0016020|GO:0140359
Cca02g00679 583 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 577 - -
Cca02g00679 583 ProSitePatterns ABC transporters family signature. 133 147 IPR017871 GO:0005524
Cca02g00679 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 226 IPR027417 -
Cca02g00679 583 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 233 IPR003439 GO:0005524
Cca02g00679 583 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 577 - -
Cca02g00679 583 Pfam ABC-2 type transporter 190 251 IPR043926 GO:0140359
Cca02g00679 583 Pfam ABC transporter 10 161 IPR003439 GO:0005524
Cca02g00679 583 SMART AAA_5 19 210 IPR003593 -
Cca02g00679 583 Gene3D - 2 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00679 Cca-Chr2 15855782 15861140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00679 9 247 Calmodulin-binding Proteins AT2G36910 29.796 6.84e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00679 K05681 - gmx:100798801 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00679 02 15855782 15861140 Cca02g00679 02 15855782 15861140 ECH
Cca03g02613 03 47502413 47510745 Cca02g00679 02 15855782 15861140 PCT