Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00673 ATGGAGGTTCCAGGAATGGAAGGCAAGACCGAAAGTCATATGACATCGGCAGCAGCCTTTGTGGAAGGAGGTATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGTCTTGAGGATTTTTGCAAAAGTGATCCTGCAACTGTCACTAATTGCAGGCATGACTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGCCCTATGTGTTGGCAGCCTATCAGCTTGAAGGATGCTACCAGTCAAGAGTTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCGATTTTTCGTCATCCGACACTTGGTGATTTGCAATTGCAGCATTTACCCATGGGTGCGAATGAGTCTGATATTGAAGAGAGAATAATTCAACATATAGCTGCTGCAGCAGCAATGAGGAGAGCACACCACCTCGGCCGGAGGGAAGGCCAAAGAACTAGGTCATCAGCTCATGGCCGTCCAAATGTCGTGGTATACTCAACTCAGCCTGGTGCACCTCCATCAACTGCTGAAGGGGGAAGTGAACCAGCTGCAATTCCTGTAGGAAGTCCATCTACCCCACTTACATTTGGTGGAAATGAGCAATCATCACCACCACAGCACATCCCTCAATTTCATACTCGGAGTACTTCTTTACCTCCTGGCACTACTGTCACAGCAACCAATCTTCAAGGAATTCACTCTAATGATAGAAGGTTTGCCTCTCATTCCTTGCCTGCAAACCAAGATAGAGCACAGCCATCAGAACAATCGTTCTCCGATTCTCTGCGTTCCAGATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCGAAGGGCACTAGGGGATGGAAGGAGAGGTTGTTCTCTCCTAATTCTTCCATGTCAGAACTTGGATCAGAAGTTAGGAGAGAATTGAATGCCAAAATCGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAGGAGAAAGTAATAGGGCTGCAGGCACTTCTTTATCAAATCACTTGGCGAATCGTTCCAATGCAGAGACAAGCAACAACCAAAACAATGTGGAAGCTCGTGGAGAGAACTCTCTGCGTGACAATAATACTCCAGCATGTTCTGCTAACTCAAATTCAAACTGA 1146 0.4651 MEVPGMEGKTESHMTSAAAFVEGGIQEACDDACSICLEDFCKSDPATVTNCRHDFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVELERSLRDTPSRNAAIFRHPTLGDLQLQHLPMGANESDIEERIIQHIAAAAAMRRAHHLGRREGQRTRSSAHGRPNVVVYSTQPGAPPSTAEGGSEPAAIPVGSPSTPLTFGGNEQSSPPQHIPQFHTRSTSLPPGTTVTATNLQGIHSNDRRFASHSLPANQDRAQPSEQSFSDSLRSRFNAVSMRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETGESNRAAGTSLSNHLANRSNAETSNNQNNVEARGENSLRDNNTPACSANSNSN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00673 381 MobiDBLite consensus disorder prediction 161 180 - -
Cca02g00673 381 Pfam Ring finger domain 32 73 IPR001841 -
Cca02g00673 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 378 - -
Cca02g00673 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
Cca02g00673 381 MobiDBLite consensus disorder prediction 146 233 - -
Cca02g00673 381 MobiDBLite consensus disorder prediction 198 233 - -
Cca02g00673 381 SMART ring_2 33 73 IPR001841 -
Cca02g00673 381 Coils Coil 309 329 - -
Cca02g00673 381 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 378 - -
Cca02g00673 381 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Cca02g00673 381 SUPERFAMILY RING/U-box 25 80 - -
Cca02g00673 381 MobiDBLite consensus disorder prediction 328 381 - -
Cca02g00673 381 MobiDBLite consensus disorder prediction 331 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00673 Cca-Chr2 15655690 15660374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00673 30 81 C3H Transcription Factor Family AT4G00335 44.231 1.32e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00673 K19043 - gmx:100803582 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00673 02 15655690 15660374 Cca02g00673 02 15655690 15660374 ECH
Cca03g02609 03 47473507 47479110 Cca02g00673 02 15655690 15660374 PCT