Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00670 ATGGGAAACACCTGTATTGGATCGAGAACCTCTAAAGGTGGAACGTCATCTAGTTCATTCTGGTGGTCACGCAAGAAAGACGCTTCTCATGCAAAAAAAGGTGGCAAAAAGAGCAAAAAAGACACGGAAACCAAGCCTCCACAGGTAGTGAAAATAGAGAGGGATGAGGCGAATGCACCTCCACCAAGAGAGACTAAACCACCTTCAGAGCCAACAAGGCCAGAGCCAGCAAAACCGAAGAAGCCACTCAATGTGAAGAGGCTAGCAACTGCAGGCCTCAAAGCAGATTCAGTTTTGCTAAGGAAAACCGGTAACCTGAGGGATTCCTACAATTTGGGACCAAAGCTCGGACAAGGCCAGTTTGGAACCACTTTCCTTTGTGTGGAGAAGGCCACTGGGAAGGAGTATGCATGCAAGTCCATATTGAAGAGGAAGCTTTTGACAGATGAGGATGTGGAGGATGTGAGAAGGGAGATTCAGATAATGCACCACTTGGCAGGGAGTCCTAATGTGATCTCCATCAAGGAGGCTTTTGAGGACAATGTTGCAGTTCATGTTGTTATGGAGCTGTGTGCAGGGGGTGAGCTGTTTGATAGGATTGTGGAAAGAGGGCATTACACTGAGAAAAAGGCTGCTAAGCTTTCAAGGACTATTGTTGGTGTCATTGAGTCTTGCCACTCCCTTGGAGTGATGCATAGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTAATCAGCAAGAAGAAGCACCTCTCAAGGCAATAGATTTTGGACTGTCTGCATTTTTCAAACCAGGTGAAATTTTCAACGATGTAGTAGGAAGTCCTTATTATGTAGCGCCTGAAGTTCTTCGCAAGCGTTATGGCCCTGAAGCAGATGTGTGGAGTGCCGGTGTCATAATATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAGGAGATATTTGAGGCAATATTGCATCATGAACTTGATTTCACATCGGATCCTTGGCCTGTTATATCTGAAAGTGCCAAAGACTTGGTTAGGAAGATGCTGGTCAGAGATCCTAGTAAAAGGATATCAGCTCATGATGTTCTTCGTCACCCTTGGATTCATGTTGATGGAGCAGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAACAGTTCTATGCAATGAACAAACTCAAGAAAATGGCTCTTAGAGTTATAGCAGAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGATGATAGACACAGACAATAGTGGTCAAATTACATTCGAAGAACTCAATGTTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATTTATGACCTTATGCAAGCAGCTGATGTTGATAACAGTGGCACAATTGATTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAGATTGACAGGGAAGATCATCTAGTTGCAGCATTCTCTTATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATTGGAGATGTCCGCTTGGAGGAAATGATCCGAGAAGCTGATCAGGACAATGATGGAAGAATAGACTACAATGAATTTGTGGCTATGATGCAGAAAGGCAATGCAGAGTTGGGTAAGAGGGGTCGAAAGGGTAGTAGCACTAGTTTTAGAATTGGATTTAGGGAGGCACTACATGAGTTGCATTCTATCACTGGACGAGTAGACCAGATGACCGTCCAAGTGAACCCATTACTCATCACAATGGCCTCAAGATGCAAGGAAAAAGGTGAGGTCTACAAGGGTGATTGGGAGGTCACCATAACCCAAGGGACTATAATGCACTTATCTACTTGA 1881 0.4365 MGNTCIGSRTSKGGTSSSSFWWSRKKDASHAKKGGKKSKKDTETKPPQVVKIERDEANAPPPRETKPPSEPTRPEPAKPKKPLNVKRLATAGLKADSVLLRKTGNLRDSYNLGPKLGQGQFGTTFLCVEKATGKEYACKSILKRKLLTDEDVEDVRREIQIMHHLAGSPNVISIKEAFEDNVAVHVVMELCAGGELFDRIVERGHYTEKKAAKLSRTIVGVIESCHSLGVMHRDLKPENFLFVNQQEEAPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLSGVPPFWGESEQEIFEAILHHELDFTSDPWPVISESAKDLVRKMLVRDPSKRISAHDVLRHPWIHVDGAAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGQITFEELNVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIDREDHLVAAFSYFDKDGSGYITQDELQQACEEFGIGDVRLEEMIREADQDNDGRIDYNEFVAMMQKGNAELGKRGRKGSSTSFRIGFREALHELHSITGRVDQMTVQVNPLLITMASRCKEKGEVYKGDWEVTITQGTIMHLST 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00670 626 ProSitePatterns Protein kinases ATP-binding region signature. 116 143 IPR017441 GO:0005524
Cca02g00670 626 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Cca02g00670 626 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Cca02g00670 626 Pfam EF-hand domain pair 487 547 IPR002048 GO:0005509
Cca02g00670 626 Pfam EF-hand domain pair 416 476 IPR002048 GO:0005509
Cca02g00670 626 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Cca02g00670 626 PANTHER CALCIUM-DEPENDENT KINASE 28 559 - -
Cca02g00670 626 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Cca02g00670 626 CDD EFh 487 547 IPR002048 GO:0005509
Cca02g00670 626 CDD STKc_CAMK 110 367 - -
Cca02g00670 626 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Cca02g00670 626 MobiDBLite consensus disorder prediction 68 82 - -
Cca02g00670 626 MobiDBLite consensus disorder prediction 1 83 - -
Cca02g00670 626 ProSiteProfiles Protein kinase domain profile. 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00670 626 Gene3D Transferase(Phosphotransferase) domain 1 196 392 - -
Cca02g00670 626 Gene3D - 393 552 - -
Cca02g00670 626 SMART efh_1 415 443 IPR002048 GO:0005509
Cca02g00670 626 SMART efh_1 521 549 IPR002048 GO:0005509
Cca02g00670 626 SMART efh_1 487 515 IPR002048 GO:0005509
Cca02g00670 626 SMART efh_1 451 479 IPR002048 GO:0005509
Cca02g00670 626 SUPERFAMILY EF-hand 407 548 IPR011992 -
Cca02g00670 626 ProSiteProfiles EF-hand calcium-binding domain profile. 521 552 IPR002048 GO:0005509
Cca02g00670 626 SUPERFAMILY Protein kinase-like (PK-like) 107 369 IPR011009 -
Cca02g00670 626 MobiDBLite consensus disorder prediction 34 61 - -
Cca02g00670 626 Pfam Protein kinase domain 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00670 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cca02g00670 626 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 559 - -
Cca02g00670 626 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Cca02g00670 626 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g00670 626 Gene3D Phosphorylase Kinase; domain 1 113 195 - -
Cca02g00670 626 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Cca02g00670 626 SMART serkin_6 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00670 Cca-Chr2 15580276 15586465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00670 1 570 EF-hand Containing Proteins AT5G04870 67.705 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca02g00670 Pkinase 6.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00670 K13412 - gmx:100800415 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00670 02 15580276 15586465 Cca03g02604 03 47444639 47450525 PCT