Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00659 ATGGATTCAAAAAAAGTGACGAACATGAGCGCTATCGTAAAGAAGACGAGAGGACGGCAAAAGATCGAGATGAAAAAGATGACGAATGAGCGGAACCTTCAAGTGACATTCTCAAAGCGTCGCAATGGGGTCTTCAAGAAAGCAAGTGAGCTCGCAACCCTTTGTGGAGTGGACCTTGCTGTTATCGTGTTCTCACGTGGTGAAAGAGTTTTCTCCTTTGGCACCCCCAACGTGGATTCCGTCATCCAACGTTATACGGGGAGGGTTGCTCCTCCCCTTACTAGCTTGGCCCACCTCACTGTGGATGAGCGTGAGCTCCATGCACACCTTGGCTATCTATCCAACCAGTTTGCTGCAGAGAAGAAACGGGAGGAGGAACTGAGTCGTTTGCTGAAGACTGCGGAGAATCACTTTTGGTGGGCCACACCAATTGAAAACATGAACAAAGCCCAGCTTGAAAAGTTCAAGATTGCATTGTTGAATTTGAAGACACGTATTGATGAGAAAAAAGAAAAGTTACTCGATGAGAGCACTTATAACTCTCCTCATTTTTTTGCAGGTGGAGGTTCCTCTTCCAATGTTAATGACACTATGAATGTATGCCCACAACCATTTTTGAGGAACCATGTGATTGATGGGAGCGTCACGCGCAACCGTCGATTTAACAACATGTTCAgagatggacatgaacaaggacatggacatggacctggacCTACTTTTGGGTTCTTTTGA 735 0.4327 MDSKKVTNMSAIVKKTRGRQKIEMKKMTNERNLQVTFSKRRNGVFKKASELATLCGVDLAVIVFSRGERVFSFGTPNVDSVIQRYTGRVAPPLTSLAHLTVDERELHAHLGYLSNQFAAEKKREEELSRLLKTAENHFWWATPIENMNKAQLEKFKIALLNLKTRIDEKKEKLLDESTYNSPHFFAGGGSSSNVNDTMNVCPQPFLRNHVIDGSVTRNRRFNNMFRDGHEQGHGHGPGPTFGFF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00659 244 PANTHER MADS BOX PROTEIN 17 170 - -
Cca02g00659 244 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Cca02g00659 244 Coils Coil 152 172 - -
Cca02g00659 244 SUPERFAMILY SRF-like 18 95 IPR036879 GO:0003677|GO:0046983
Cca02g00659 244 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Cca02g00659 244 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Cca02g00659 244 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Cca02g00659 244 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Cca02g00659 244 Gene3D - 29 93 IPR036879 GO:0003677|GO:0046983
Cca02g00659 244 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Cca02g00659 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 170 - -
Cca02g00659 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00659 Cca-Chr2 15233108 15234240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00659 12 242 Type I MADS-box Gene Family AT5G60440 40.650 2.62e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g00659 SRF-TF 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00659 - - ccaj:109815930 329.331