Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00658 ATGGATTCAAAAAAAGTGTCAAACACGAATATTGTTGTGAAGAAGACCAAGGGTCGACAAAAGATCGAGCTGAAAAGGATAACCAACGAGCGGAACCTTCAGGTGACATTCTCAAAGCGCCGCAATGGGATTTTTAAGAAAGCAAGCGAGCTTGCAACTCTTTGCGGCGTGGACCTTGCTGTCATAATTTTTTCTCCTGGTCAGAGGGTTTTCTCTTTTGGCACCCCCAGTGTGGACTCTGTCATCCAACGCTATATGGGCCAGGCTCCACCTCCCCTCCTTAACTTGGACCTCAATGAGGCCCACCTCAACGCAGACGAGCGTGAGCTCCACGCACACCTTGGATACCTATCCAACCAGTTTATTGCAGAGAAGAAACGTGAAAAGGAACTCAATCGTTTGTTGAAGACCGCGGAGAATAACTATTGGTGGGCCACACCAGTTGATAACATGAACAAAACCCAACTTGAGAAGTTCAAGACTGCGTTGCTGGATTTGAAGACAAATATTAATCTGAAAAAACAGAAGCTCCTCAATGAGAGCACTTATAACTGTCCGTGTTTTTTTGCTGCAAGTGCAGGCTCGTCTTCTAATGTTAATGACATTGGGACTGTGCATCCACCACCATTGTTGAGGAACCGTGTGATTGATGATAGCGTCACGTGCCACCATCAATTTAACAACATGGACAAAGATGGAGAGGGAGAAGGACATGGACCTACTTTTAGGTTCTTTTGA 738 0.4553 MDSKKVSNTNIVVKKTKGRQKIELKRITNERNLQVTFSKRRNGIFKKASELATLCGVDLAVIIFSPGQRVFSFGTPSVDSVIQRYMGQAPPPLLNLDLNEAHLNADERELHAHLGYLSNQFIAEKKREKELNRLLKTAENNYWWATPVDNMNKTQLEKFKTALLDLKTNINLKKQKLLNESTYNCPCFFAASAGSSSNVNDIGTVHPPPLLRNRVIDDSVTCHHQFNNMDKDGEGEGHGPTFRFF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00658 245 Gene3D - 29 94 IPR036879 GO:0003677|GO:0046983
Cca02g00658 245 CDD MADS_MEF2_like 18 86 IPR033896 GO:0000977|GO:0045944
Cca02g00658 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 177 - -
Cca02g00658 245 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Cca02g00658 245 PANTHER MADS BOX PROTEIN 17 177 - -
Cca02g00658 245 SUPERFAMILY SRF-like 18 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00658 Cca-Chr2 15205354 15206393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00658 12 198 Type I MADS-box Gene Family AT5G60440 46.597 2.49e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g00658 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00658 - - ccaj:109815930 495.352