Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00657 ATGAACAACACAGCTGATTCCTCTGGATTCCTTGGCTCCAACAACATAAGTGGCTTTGGCATGGGCATAGGAATCTCAATTGGGATTCTTCTGCTCATCACAACCATCACGCTCACTTCCTACTTCTGCACCAGGGCACAGGTGCCAACTGCTCCAGCTCCTAGGAGATCAAGCACTGGTGGTGGTCCACAATTCCTTGAGCCACACCACACAATAGTTGATGTAGGGTTAGATGAAGCCACAATCATGAATTACCCCAAGATGCTCTACTCTGAAGCCAAGCTAAGGAAATCTAATTCCACAGCAGCAACAAGCTGTTCCATTTGTCTTGGAGATTACAAAAGTTCTGATTTGCTTAGGGTTTTGCCTGATTGTGAGCATGTGTTCCACCTCAAGTGCATAGACCCCTGGTTGAGGTTGAATCCAACTTGTCCCCTTTGCAGAACATCCCCAATCCCCACACCTCTCTCAACCCCTCTGGCTGAAGTGGTCCCATTAGCAACAAGGCGAGATTGA 516 0.4787 MNNTADSSGFLGSNNISGFGMGIGISIGILLLITTITLTSYFCTRAQVPTAPAPRRSSTGGGPQFLEPHHTIVDVGLDEATIMNYPKMLYSEAKLRKSNSTAATSCSICLGDYKSSDLLRVLPDCEHVFHLKCIDPWLRLNPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00657 171 SUPERFAMILY RING/U-box 82 153 - -
Cca02g00657 171 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 171 - -
Cca02g00657 171 CDD RING-H2_PA-TM-RING 106 148 - -
Cca02g00657 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 171 IPR045899 -
Cca02g00657 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cca02g00657 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Cca02g00657 171 SMART ring_2 106 147 IPR001841 -
Cca02g00657 171 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00657 Cca-Chr2 15157126 15158026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00657 6 168 C3H Transcription Factor Family AT2G35910 61.350 4.76e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00657 - - gmx:121172638 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02597 03 47377910 47378532 Cca02g00657 02 15157126 15158026 PCT