Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00655 ATGGCGATGCAAACTGCTTATCTGAAAGAACATGAAGGAATTGTTCACAATTCTGTTGGACAGTTGTCGGCTCCGTGGTGGAGTGCCTTTGGATCTCAATCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCATTGGATATTTCCAATTGTGTAGAACAATTTTCTTCCGGTAAGCAAACTGTACGAGGAGTGGAACAATTGTTGGATAAAGGACATGCAACCCAATTTACCATCTTTCCAGATGATAGTAAAATGTCGGGTGATGCACAAAATCCTCAGGCAACCTTATCACTGCAATCACCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCTATGATATGTGCAAAATATCCTTACATGGATCAATTTTATGGGCTCTTCTCAGCTTATGGACCTCAAATTTCGGGGCGTATAATGCTTCCAATTAACATGACATCTGATGATGGACCAACTTACGTAAATGCTAAGCAGTATCATGGAATCATCAGACGCCGGCAGTCACGTGCAAAAGCTGTTCTTGAGAACAAATTGATTAAACGCCGCAAGCCATATATGCATGAATCACGCCATCTACATGCGATGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAACTTCTACAAACGGAAATGGTAAAAAGGAAAGTGAAGCAAGTAAAACTGGCAGCCGACAGTTGCATTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTAAATTCATCGAAGGAAACAAATCGAAGCAGTCCAAATATCTCTGGTTCAGAGGTGACCAGCATATATTTGCGAGAAGGTTTTGATAGCTTTTCTGTCAATCCTCTTGGATCTTCTGTCCACACTTTAGCGGATATGATCGGTAGTGGACATGGTATTATCATGCCCACTAAATGGGTTGCAGCAGTACCAGATAACTGTTGCAACCTTAAAGTTTGA 981 0.423 MAMQTAYLKEHEGIVHNSVGQLSAPWWSAFGSQSVYGEYCGQIKPFSLDISNCVEQFSSGKQTVRGVEQLLDKGHATQFTIFPDDSKMSGDAQNPQATLSLQSPLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAYGPQISGRIMLPINMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLENKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKTSTNGNGKKESEASKTGSRQLHSSASQSSEVLQSEVGTLNSSKETNRSSPNISGSEVTSIYLREGFDSFSVNPLGSSVHTLADMIGSGHGIIMPTKWVAAVPDNCCNLKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00655 326 PRINTS CCAAT-binding transcription factor subunit B signature 158 180 IPR001289 GO:0003700|GO:0006355
Cca02g00655 326 PRINTS CCAAT-binding transcription factor subunit B signature 189 212 IPR001289 GO:0003700|GO:0006355
Cca02g00655 326 SMART cbf3 154 215 IPR001289 GO:0003700|GO:0006355
Cca02g00655 326 MobiDBLite consensus disorder prediction 195 270 - -
Cca02g00655 326 Gene3D - 155 217 - -
Cca02g00655 326 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 325 - -
Cca02g00655 326 MobiDBLite consensus disorder prediction 212 270 - -
Cca02g00655 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 158 212 IPR001289 GO:0003700|GO:0006355
Cca02g00655 326 ProSiteProfiles NF-YA/HAP2 family profile. 155 215 IPR001289 GO:0003700|GO:0006355
Cca02g00655 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 325 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00655 Cca-Chr2 15027258 15032637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00655 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.228 2.73e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca02g00655 CBFB_NFYA 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00655 K08064 - gmx:100808195 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02595 03 47323748 47328627 Cca02g00655 02 15027258 15032637 PCT