Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00652 ATGTGGGTCGCCATGGCTGCTTCCTCCGTTATCTGTGACATTTCACTAACCTTTAGCTTCAGACACAGGCTCATATCCCTCAAACCCTTCAACAGAGTCATTGTttctcatctctcactttaccattttgcccttccttctccttctccttctccttcgctttccttcCAAGACACTCGAGAACAACCCCTTGAACGTGAAACCTTACTAAAATCAAAGCCAAAGGCAAACCAATCGGAGAGGCTCTATGTAGGAAACTTGCCTTACGCATTGCTCTCTTCCCAGTTGGCTCAGCTGTTTGGAGAGGCTGGCAATGTTGTATCCGTTGAGATTGTGTATGATGACATAGCAAATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGTGTGGAGGAAGCTGAACGAGCGATTCAAATGTTTGATGGCTCGGAAATTGGAAGTAGGATTATTAAGGTAAACTTCACACGAATACCCAAAAGAGGCAAACGGCTAGTAATGGGCTCCAACTACAGAGGCTTTGTAGACAGTCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTCTGACATCACAGGGTCTTAGAGATGCCTTTGCTGAGCAGCCAGGCTTCTTGAGTGCCAAAGTCATCTATGAAAGGAACAGTGGAAAATCTCAGGGATATGGGTTTGTCTCTTTTCAAACTGCTGAGGATGTAGAGGCTGCTTTAAATTCTATGAATGGTGTGGAGGTTCAAGGGCGACCCTTACGACTGAAACTAGCTGCAGATAAGAAGACTTCATCTCCTCCAGTAATTCATGAAAATACAGGAAATAATGTTGATATCATGGAAATGGTGTTTAGTGTCAGCACATGA 858 0.4103 MWVAMAASSVICDISLTFSFRHRLISLKPFNRVIVSHLSLYHFALPSPSPSPSLSFQDTREQPLERETLLKSKPKANQSERLYVGNLPYALLSSQLAQLFGEAGNVVSVEIVYDDIANRSRGFAFVTMGSVEEAERAIQMFDGSEIGSRIIKVNFTRIPKRGKRLVMGSNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAEQPGFLSAKVIYERNSGKSQGYGFVSFQTAEDVEAALNSMNGVEVQGRPLRLKLAADKKTSSPPVIHENTGNNVDIMEMVFSVST 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00652 285 PANTHER OS02G0815200 PROTEIN 7 266 - -
Cca02g00652 285 Gene3D - 55 173 IPR012677 -
Cca02g00652 285 SMART rrm1_1 180 253 IPR000504 GO:0003723
Cca02g00652 285 SMART rrm1_1 81 154 IPR000504 GO:0003723
Cca02g00652 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Cca02g00652 285 SUPERFAMILY RNA-binding domain, RBD 176 261 IPR035979 GO:0003676
Cca02g00652 285 Gene3D - 174 264 IPR012677 -
Cca02g00652 285 SUPERFAMILY RNA-binding domain, RBD 71 165 IPR035979 GO:0003676
Cca02g00652 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 257 IPR000504 GO:0003723
Cca02g00652 285 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 7 266 - -
Cca02g00652 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Cca02g00652 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00652 Cca-Chr2 14948492 14953281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00652 79 259 Eukaryotic Initiation Factors Gene Family AT3G16380 31.183 1.77e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00652 - - gmx:100789843 389.808