Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00651 ATGAACGACTTGTTCTCGGGCTCCTTCTCCCGTAACACCGAGCAAGCCTCGCCGGACGGCCACCACGTGATCGAGATGGCGTCTCCGCCCTCCTCCGGCGGCGTAAACCTAGAGAAGTTCTTCGAGGAAGTTGAGTCGGTGAAGGAGGAGCTGAAGGAGTTGGAGCGTCTCCACGAGAGCCTACGTTCGTCCCATGAGAAAAGCAAGACCCTTCACAGCGCAAAAGCTGTGAAGGATCTTCGCTCTCGCATGGATGCTGACGTGGCACTTGCTCTTAAGAGAGCAAAGCTAGTCAAGATCCGGCTCGAGGCGTTGGACCGGTCCAATGAAGCGAGCCGGAGCTTGCCCGGCTCGGGACCCGGTTCGTCCTCGGACCGGACGAGAACTTCTGTGGTGAGTGGGCTGAGGAAGAAGCTGAAGGACTCGATGGACAGCTTCAACAACCTCAGACAACAGATATCGTCAGAGTACAGGGAAACCGTGCAGCGTAGATACTACACTGTCACCGGAGAGAACCCGGATGACAAAACTATTGACCTCCTTATTTCTACAGGCGAAAGCGAAAGATTCTTGCAGAAAGCGATTGAGCAGCAAGGGAGAGCGAGCGTGATGGAGACGATTCAAGAGATTCAGGAGAGGCACGACACGGTGAAGGAGATAGAGAGGAACCTGAAGGAGCTGCACCAAGTGTTCATGGACATGGCGGTGTTGGTGCAGTCGCAGGGGGAACAACTAGACGACATCGAGAGCCACGTGGCGCGAGCCAATTCGTACGTCAGGGGTGGGGTCCAGCAGTTGCACGTTGCCAGGAAGCACCAGAAAAATACCCGAAAGTGGACCTGCATCGCCATCATACTGCTCCTCATTATAATCTTGGTCATAGTTCTCCCTATAGTTCTAAGAAACTGA 909 0.5446 MNDLFSGSFSRNTEQASPDGHHVIEMASPPSSGGVNLEKFFEEVESVKEELKELERLHESLRSSHEKSKTLHSAKAVKDLRSRMDADVALALKRAKLVKIRLEALDRSNEASRSLPGSGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESERFLQKAIEQQGRASVMETIQEIQERHDTVKEIERNLKELHQVFMDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLLIIILVIVLPIVLRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00651 302 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Cca02g00651 302 SMART tSNARE_6 202 269 IPR000727 -
Cca02g00651 302 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca02g00651 302 CDD SynN 37 194 IPR006011 GO:0016020
Cca02g00651 302 MobiDBLite consensus disorder prediction 111 130 - -
Cca02g00651 302 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 11 297 - -
Cca02g00651 302 MobiDBLite consensus disorder prediction 1 21 - -
Cca02g00651 302 Gene3D - 196 300 - -
Cca02g00651 302 SMART SynN_4 32 158 IPR006011 GO:0016020
Cca02g00651 302 PANTHER SYNTAXIN 11 297 IPR045242 -
Cca02g00651 302 MobiDBLite consensus disorder prediction 108 133 - -
Cca02g00651 302 MobiDBLite consensus disorder prediction 1 17 - -
Cca02g00651 302 CDD SNARE_syntaxin1-like 206 266 - -
Cca02g00651 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Cca02g00651 302 Coils Coil 37 64 - -
Cca02g00651 302 Pfam SNARE domain 243 295 IPR000727 -
Cca02g00651 302 Gene3D - 35 167 - -
Cca02g00651 302 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00651 Cca-Chr2 14943725 14945720 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00651 26 281 SNARE and Associated Proteins AT3G11820 75.875 8.27e-147 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00651 K08486 - gmx:100793347 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00651 02 14943725 14945720 Cca02g00651 02 14943725 14945720 ECH
Cca03g02592 03 47308770 47310109 Cca02g00651 02 14943725 14945720 PCT