Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g00648 | ATGAACGACCTAATCTCGGGTTCCTTCTCGCGCTTCCGCGGCGAGCAGGCCTCGCCGGAGCACCACCAGCACGTGGTGGAGATGTCGGGCATCGGGCGGCGCGGCGGGGAGGTGAACCTGGACAAGTTCTTCGAGGACGTGGAGGGCGTGAAGGAGGAGCTGAAGGAGCTGGAGGAGCTGGCGCGGAGCCTCAAGAGCGGCCACGAGCAGAGCAAGACGCTGCACAACGCCAAGGCCGTCAAGGACCTCCGCTCGCGCATGGACGCCGACGTTGCGCTCGCCCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCCCTCGACCGCTCCAACGCCGCCAACCGCAACTTGCCTGGCTGCGGACCCGGTTCCTCCTCCGACCGGACCCGCACCTCCGTCGTCAACGGCTTGAAGAAGAAGCTCAAGGACTCCATGGAGTCCTTCAACGAGATTCGCCACCTTGTGTCGTCCGAGTACCGGGAGACCGTGCAACGACGCTACTTCACCGTCACCGGCGAGAATCCTGATGACAACACCCTCGATCGCTTGATCTCCACTGGTGAGAGTGAGACCTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGATTTGGAGAAGAGTCTCAAGGAGTTGCACCAGGTGTTCCTTGACATGACAGTGTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCATTCGTTTGTGCGCACTGGAGCTGAGCAGTTGCAGACTGCACGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGCTTGTGGTGCTCTTCACTGTGAGGCCGTGGAAACATAGCAGTAGTGGCGGCAGTGATGGTAGTCAACCTGCACCAGCTCAAACACCACCTCCACCCCCTGTTAATGCTTAA | 996 | 0.5713 | MNDLISGSFSRFRGEQASPEHHQHVVEMSGIGRRGGEVNLDKFFEDVEGVKEELKELEELARSLKSGHEQSKTLHNAKAVKDLRSRMDADVALALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNEIRHLVSSEYRETVQRRYFTVTGENPDDNTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIILLVVLFTVRPWKHSSSGGSDGSQPAPAQTPPPPPVNA | 331 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g00648 | 331 | PANTHER | SYNTAXIN | 12 | 310 | IPR045242 | - | |
| Cca02g00648 | 331 | MobiDBLite | consensus disorder prediction | 308 | 331 | - | - | |
| Cca02g00648 | 331 | Coils | Coil | 40 | 67 | - | - | |
| Cca02g00648 | 331 | Gene3D | - | 37 | 169 | - | - | |
| Cca02g00648 | 331 | Pfam | SNARE domain | 246 | 298 | IPR000727 | - | |
| Cca02g00648 | 331 | SMART | tSNARE_6 | 205 | 272 | IPR000727 | - | |
| Cca02g00648 | 331 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 12 | 310 | - | - | |
| Cca02g00648 | 331 | ProSitePatterns | Syntaxin / epimorphin family signature. | 216 | 255 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cca02g00648 | 331 | CDD | SynN | 40 | 197 | IPR006011 | GO:0016020 | |
| Cca02g00648 | 331 | SUPERFAMILY | t-snare proteins | 38 | 265 | IPR010989 | GO:0016020|GO:0016192 | |
| Cca02g00648 | 331 | Gene3D | - | 206 | 303 | - | - | |
| Cca02g00648 | 331 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 210 | 272 | IPR000727 | - | |
| Cca02g00648 | 331 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cca02g00648 | 331 | Pfam | Syntaxin | 42 | 245 | IPR006011 | GO:0016020 | |
| Cca02g00648 | 331 | CDD | SNARE_syntaxin1-like | 209 | 271 | - | - | |
| Cca02g00648 | 331 | SMART | SynN_4 | 35 | 161 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca02g00648 | Cca-Chr2 | 14845351 | 14847421 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca02g00648 | 36 | 328 | SNARE and Associated Proteins | AT3G11820 | 75.748 | 2.86e-156 | 438 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g00648 | K08486 | - | gmx:100809258 | 496.893 |