Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00645 ATGCTACCCTTTCGTGGGAATGTGCTTCTCATATCTATGTTGTCTGCTGTTGAAAGAAACTTGAAATGGTGCTATCGATGGCTTTGCTTCCCCACTTACCCTCATCACCACCAATTCCGTCATGCCACGTGTCCTCAGCACCGACACCCTGTATTAGCCTTCGGGGGTGTGACACATTCTCAGCCTTACCTACCCCCATGCATCCTCATGTGCATGGGCTTTGTGGCGATGGAGAGTGGGTGGAAACCTGAGGTTGAGATATCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTATAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGATGCAGAAGGTACTGGACGAAAGGAGGGTCTCTCCGCAATGTGCCTGTAGGTGGTGGTTGCAGAAAAAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAAATTCACCTAGTAACCGTGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCTAGAATAAGGAATTCTTCAGCTTCTAGCTCCTCCTCAGTGATGAGTGACGGACCTAATATTGATCTTGCCCTAGTGTATGCAAATTTCCTCAACCAAAAGCCCAAATCTGAAGCTGATGAGCTTGAGGGTAATCCAGATCAAGTTCAAACAGTTTTTGATCCTTCTCTAGAAGTTGGTCCAAGTACTTTGCCTGAAGAACTTGGTCTTACTGCGTGTTTGACGCTTCCTGAACAACCATCCATTATTGAGGGTAATAACAATGACCAAATGTGCCCTAACGAGTTCAACTCTATGCCGATTCTTCAAAAGGATGGAATTGAACAATGTAGTAGTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGAGGAAGCCTCACATGATCATATGATGTGGTCAAACTCTGAGATGATGATGAATCATGCATTTCATCAAGTCACACAATTGCCACTACTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCAAGAGATGCTTCTTTTTCCAGGCCTTGA 1095 0.4438 MLPFRGNVLLISMLSAVERNLKWCYRWLCFPTYPHHHQFRHATCPQHRHPVLAFGGVTHSQPYLPPCILMCMGFVAMESGWKPEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKNSPSNRATDHNNNPVGHSYDPRIRNSSASSSSSVMSDGPNIDLALVYANFLNQKPKSEADELEGNPDQVQTVFDPSLEVGPSTLPEELGLTACLTLPEQPSIIEGNNNDQMCPNEFNSMPILQKDGIEQCSSHGGAMNFELPPLPGEEEASHDHMMWSNSEMMMNHAFHQVTQLPLLGPEVHDADLLIGNWSPFDLPRDASFSRP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00645 364 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Cca02g00645 364 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Cca02g00645 364 MobiDBLite consensus disorder prediction 157 195 - -
Cca02g00645 364 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 360 IPR045174 GO:0003700|GO:0006355
Cca02g00645 364 Pfam Dof domain, zinc finger 90 143 IPR003851 GO:0003677|GO:0006355
Cca02g00645 364 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 77 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00645 Cca-Chr2 14725397 14726868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00645 81 359 C2C2-Dof Transcription Factor Family AT3G52440 42.177 5.15e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca02g00645 zf-Dof 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00645 - - gmx:100794208 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00645 02 14725397 14726868 Cca02g00645 02 14725397 14726868 ECH
Cca03g02590 03 47268739 47269674 Cca02g00645 02 14725397 14726868 PCT