Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00644 ATGGAGGAGATCGACGTGCCTCCGTTTTTCGTGTGCCCCATTTCCCTCGAACTCATGAAGGACCCCGTAACGGTGTCTACGGGAATCACCTACGACCGCGAAAGCATCGAGAAATGGGTCTTCGCCGGAAAGAACGACACGTGTCCCGTCACGAAGCAGAGCCTGATCCTCCCTGACCTCACTCCGAACCACACGCTCCGCAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAACGGATCCCAACTCCCAAAGCACCCGTCGACAAAGCCATCATCGAGAAACTCCTCAAAGACGCTTCGGACTCCCCGAGCCTCCAGCTTCGGTCCCTCCGCACCCTAAAATCGATCGTATCCGTAAACCAATCCAACAAACGCTGCGTCGAATCCGCAGGCGCAGTCGACTTCTTAGCATCGCTTATAATAACCAACACCAACGCCACTTCCTGCGTGGTGGACGATGTGGACCTAGAGCTGAAAACAAATGTATCAGACGAAGCCTTGAGTTTGTTACACGCCATTCATCTATCCGAGTCGGGTTTCAAGGCTCTGCTAACTCACTCAGAGTTCGTAAACTCTTTAACAAAGATCATGCAGAGAGGAATCTACGAGTCACGCGCTTACGCCGTTTTCTTGTTGAAGTCCATGACGGAGCTGGCGGATCCGGTTCAGTTGATTAACCTAAAACTAGAGTTGTTCACGGAGCTAGTGCAACTTCTGAAGGACCAGATTTCGGAGAAGGCTTCCAGAGCGACGCTTCAGACGCTGATTCAGGTGTGTCGATGGGGGAGGAACAGAATAAAAGCGGTGGAGGCGGGTGCGGTTGCGGTTATCGTTGAGCTTCTTCTGGATTGCAAGGAGAGGAAAGCGTGCGAGATGATGCTCATTCTGTTGGAGATTCTGTCGCAGAGTGCGGACGGAAGGGCGGCGCTGTTGGCGCACGCGGCGGGGGTGGCGGTGGTGGCCAAGAAGATTCTTAGGGTTTCGACGGTGGCCAACGATAGGGCGGCGAAGATTCTGCTGTCGGTGTGCAGATTCTCGGCGACGGCGGCGGTGGTGCAGGAGATGGTGGAGCTCGGGGTGGTGGCGAAGCTGTGTCTGGTGCTGCAGGTTGACAGTGGGGAGAGGGCGAAGGAGAAGGCGAGGGAGATTCTGAAGCTGCATGCTAGGGTGTGGAGGAACTCCACCTGTGTGCCCAGGAATTTGCTTGCTTCTTACCCCATTAATGTGTGA 1245 0.5526 MEEIDVPPFFVCPISLELMKDPVTVSTGITYDRESIEKWVFAGKNDTCPVTKQSLILPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKAPVDKAIIEKLLKDASDSPSLQLRSLRTLKSIVSVNQSNKRCVESAGAVDFLASLIITNTNATSCVVDDVDLELKTNVSDEALSLLHAIHLSESGFKALLTHSEFVNSLTKIMQRGIYESRAYAVFLLKSMTELADPVQLINLKLELFTELVQLLKDQISEKASRATLQTLIQVCRWGRNRIKAVEAGAVAVIVELLLDCKERKACEMMLILLEILSQSADGRAALLAHAAGVAVVAKKILRVSTVANDRAAKILLSVCRFSATAAVVQEMVELGVVAKLCLVLQVDSGERAKEKAREILKLHARVWRNSTCVPRNLLASYPINV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00644 414 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Cca02g00644 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Cca02g00644 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 411 - -
Cca02g00644 414 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Cca02g00644 414 SUPERFAMILY RING/U-box 3 80 - -
Cca02g00644 414 PANTHER WDSAM1 PROTEIN 1 411 IPR045185 GO:0061630
Cca02g00644 414 Gene3D - 89 400 IPR011989 -
Cca02g00644 414 SUPERFAMILY ARM repeat 95 396 IPR016024 -
Cca02g00644 414 CDD RING-Ubox_PUB 10 53 IPR045210 -
Cca02g00644 414 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00644 Cca-Chr2 14711566 14713193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00644 2 411 U-box Gene Family AT2G35930 55.769 2.15e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00644 - - gmx:100795263 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00644 02 14711566 14713193 Cca02g00644 02 14711566 14713193 ECH
Cca02g00644 02 14711566 14713193 Cca03g02589 03 47255786 47257511 PCT