Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00643 ATGGAAGAAATCGAAGTCCCTCAATACTTCATCTGCCCAATATCCCTCCAAATCATGAAGGACCCCGTGACGGCCATAACGGGCATAACGTACGATCGAGAAAGCATCGAACATTGGCTATTCACGAACAAGAACACAACATGCCCCGTGTCGAAACAAGCCCTTGCTAGAGACTCTGACCTAACACCTAACCACACCCTTCGACGCTTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTAGGCATCGATCGCATTCCCACCCCGAAACCCCCACTCAACAGAATCCAAGTGGTGAAGCTCCTCAAAGCCCTCGATGACCCCAAGATGCAACACAAAAGCCTCGCGCAGTTGGAGCTTCTCGCCGCGGAAAACGAGAGGAACAAAAAGTGCTTGCTTGAGGCGCGTGTGCCTAGGGCCATGATCATGTTCATCGTCAATTGTCACCGCAATGGCCAACTCCAAAAGGGTCTTGAAGAAGCCCTTAGTATATTGCAATTCGTTAAGATCCCCGCAGAAGAATGTGCGCTGCTTTTAAAGGAAAACGAGCAGATAGTGGATTCTCTAACATGGATTCTAAGCCGTGAGAACATGGAAAACTCTATGGCCGTGAAGTCCCACGCGGTTCTAGTACTAAAAAAAGTGATAAACAAAAGCGACACGTGTCACATTCTGGAGAGAGTGAAGCCGGAGTTCCTGGAACGCATGGTGAGGGTCCTAAGAGAAGGGCTGAGCCAGCAAGGCGTGAGCGCAGCGCTGCAAGTGTTGCTAAGCGCATGCTCGCTGGGCCGAAACCGGGTCATGATGGTGGAATCCGGTCTGGTCCACGAGCTCATCGAGATCGAGCTAACCGGACCGGAGAAGCGAGTCACGGAACTGACGCTGGCGATTCTCTTCCACCTCTGCTCCTGCGCCAACGGCAGAGCCAAGTTTCTCAGCCACGAGGGCTCCATCGCGGTGGTCACCGAGAGGATGATGAGGGTTTCCGCGGCGGTGGACGACAGCGCCGTGTTTGTTTTGTCGCTGGTTTCCAAGTTTTCCGGCACCAACGTTGTCCTGCAGGAGATGCTGAGGGTGGGAACGGTGGCCAAGCTTTGCATGCTGCTTCAGGCGGATCGTGGTAAGTACTTGAAAGACAAGGCCATGGAGATGCTCAAGTTGCACTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCCATTCCCTCCTTTTATGCCTTGTCGTGA 1224 0.527 MEEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEHWLFTNKNTTCPVSKQALARDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLNRIQVVKLLKALDDPKMQHKSLAQLELLAAENERNKKCLLEARVPRAMIMFIVNCHRNGQLQKGLEEALSILQFVKIPAEECALLLKENEQIVDSLTWILSRENMENSMAVKSHAVLVLKKVINKSDTCHILERVKPEFLERMVRVLREGLSQQGVSAALQVLLSACSLGRNRVMMVESGLVHELIEIELTGPEKRVTELTLAILFHLCSCANGRAKFLSHEGSIAVVTERMMRVSAAVDDSAVFVLSLVSKFSGTNVVLQEMLRVGTVAKLCMLLQADRGKYLKDKAMEMLKLHSEVWKNSPCFPIPSFYALS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00643 407 SUPERFAMILY ARM repeat 99 375 IPR016024 -
Cca02g00643 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Cca02g00643 407 Gene3D - 96 392 IPR011989 -
Cca02g00643 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 401 - -
Cca02g00643 407 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Cca02g00643 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Cca02g00643 407 SUPERFAMILY RING/U-box 3 83 - -
Cca02g00643 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Cca02g00643 407 Coils Coil 115 135 - -
Cca02g00643 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Cca02g00643 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00643 Cca-Chr2 14600703 14602674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00643 2 400 U-box Gene Family AT3G11840 42.342 3.46e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00643 - - gmx:100798446 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00643 02 14600703 14602674 Cca02g00643 02 14600703 14602674 ECH
Cca03g02589 03 47255786 47257511 Cca02g00643 02 14600703 14602674 PCT