Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00642 ATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGTGCTGACGGCCTTCAAACCCTCGTACTAATGAACCCCGGCTACGTCCAATACTCCGACAcgccgccgccgccgccaccCCACGGCGGAAATATCATGTTCCTCAACTCCGCCACCACCGTCGCCGGCAACACCTCCCTGCAGAGCCTCCCCCACGCGCCGTCCCCCCACACGCAGCAATTCGTCGGGGTGCCGCTGTCGGCCGCCGCGCAAGACCCGCCGCCGTCCATGCACCACGACGTCTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTGTGGAACACAATTGACCCCGGCGCGGCGGCGCGTGAGGCCTCACGCGCCGCCACCCGGGGGCTGTCGCTGAGCCTGCATGCGCAGCCCGGCGAGGACGTGCGCGCGTCGTCGTCCTCCGCCTCCGGCGCCTCCAACGGCGGCGGCGTGGCGGGGATCCAGAGCGTGCTATTGAGTTCCAAGTATTTGAAGGCCACGCAGGAGCTTCTGGACGAGGTTGTCAATGTTAACAGCGGAATTAAGGTTGAACAAGCGAAGAAGAGCTTCGAGAAAACTAAGGTGGTTGTTGAATCCTCAACCGCCGCTAGCGGCGACGGTTCTGCTGGCGGCGACGGAAGTGGGAAGCGTAGCTCAGAATTGTCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATTGTGATATCCTCATTTGAGCAAGCTGCGGGTATAGGATCTGCGAGGACGTACACTGCACTTGCACTGCAAACAATTTCAAAGCAATTTCGGTGTTTGAAGGATGCTATAACGGGGCAAATTAGAGCTGCAAACAAGAGTTTGGGAGAAGAAGATTGTTTGGGGGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGACCATCATCTAAGGCAACAGAGAGCTATTCAGCAATTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGGTTGCCAGAGAGATCGGTTTCTGTCCTACGTGCTTGGCTCTTTGAACACTTTCTGCACCCTTACCCCAAGGACTCGGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCAAGAGTTAGGCTCTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAGCATGAACTAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTGCTTTGAAAACACCAACCTCACAAGAGAAACGTCCTACCTCAGAAATCGAATCTAAAAGCTTCAGTTCCAAACAAGATGTTTCCAAAAGCCAcaacactcaaatagcttcaacttcaccatcaacatcaCCTACTGGGGGAAATCTCAAGAACCAATCAGGATTCAGTTTCATGGGATCATCAGAGCTAGATGGAATCACACAAGGAAGTCCTAAGAAACCAAGGAACCATGAAATTCTACACTCTTCGAACTTGGATGTGAAATCCAATGAGGCAAGCAATGAACAACTTTCAATGGACGAGAGACAAAGCAGGGATGGATACTCTTTTATGGGAAACCAAACAAATTTCATTAGTGGTTTTGGACAATACCCTATGGAGGAAATTGGGACACACCAAACCTTTCTCCCAAACCAAAACATTCAACTAGGAAGAGGGTTGGACATTGGTGAACCAAACCAGTTTGGTGCCTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGCATCAACATGCAGAACCCGAAGAGAGTAAGGAACCTGCTTATGCTTTGGTGGCTTTCATAA 1884 0.4915 MATYFHSNSEIQAGADGLQTLVLMNPGYVQYSDTPPPPPPHGGNIMFLNSATTVAGNTSLQSLPHAPSPHTQQFVGVPLSAAAQDPPPSMHHDVSALHGFLPRMQYNLWNTIDPGAAAREASRAATRGLSLSLHAQPGEDVRASSSSASGASNGGGVAGIQSVLLSSKYLKATQELLDEVVNVNSGIKVEQAKKSFEKTKVVVESSTAASGDGSAGGDGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCLGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPALKTPTSQEKRPTSEIESKSFSSKQDVSKSHNTQIASTSPSTSPTGGNLKNQSGFSFMGSSELDGITQGSPKKPRNHEILHSSNLDVKSNEASNEQLSMDERQSRDGYSFMGNQTNFISGFGQYPMEEIGTHQTFLPNQNIQLGRGLDIGEPNQFGALNNSTSHSSAAFESINMQNPKRVRNLLMLWWLS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00642 627 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 538 - -
Cca02g00642 627 MobiDBLite consensus disorder prediction 455 504 - -
Cca02g00642 627 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Cca02g00642 627 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 7 538 - -
Cca02g00642 627 MobiDBLite consensus disorder prediction 421 435 - -
Cca02g00642 627 SMART HOX_1 348 412 IPR001356 GO:0003677
Cca02g00642 627 Pfam Associated with HOX 163 299 IPR006563 -
Cca02g00642 627 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Cca02g00642 627 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Cca02g00642 627 CDD homeodomain 348 409 IPR001356 GO:0003677
Cca02g00642 627 Coils Coil 232 259 - -
Cca02g00642 627 MobiDBLite consensus disorder prediction 421 544 - -
Cca02g00642 627 SMART prehox3 158 300 IPR006563 -
Cca02g00642 627 MobiDBLite consensus disorder prediction 207 232 - -
Cca02g00642 627 Gene3D - 344 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00642 Cca-Chr2 14565939 14569696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00642 1 566 Homeobox Transcription Factor Family AT2G35940 50.394 6.45e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca02g00642 POX 1.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00642 - - gmx:100810851 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00642 02 14565939 14569696 Cca02g00642 02 14565939 14569696 ECH
Cca03g02586 03 47219891 47223140 Cca02g00642 02 14565939 14569696 PCT