Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00639 ATGCATCTCTTGACAGTTGACACTCAAAATGGCTTCTCCAAACGCACCGTTTCCCTAACGCACGCCATGGCGCACCCTCTCCCATTTCTCCTCCTATGTTTCTTCCCTCTTGTTCTCGCAGACACGGACCCTAACGACGTCAAGATTCTTAACGGCTTCAGAAGAGGTTTAAAGAACCCAGAGCTCTTACCGTGGCCCCAAGAAGGAGGAGACCCCTGCGGTAACGGTAACGGTAATGCTCCGTGGAAATATATCTTCTGCAACGGCAACCGAGTCTCCCAGATTCAGACCAAGAACCTGGGCCTGGTGGGCCCGCTCCCTCCCAACCTCAACGAGCTCACCATGCTCGAGAATTTGGGCCTCCAGAACAACAAGCTCAACGGGCCCTTACCTTCCCTCAACGGCTTATCAAACTTAAGATACGCGTTTCTCAACTTCAACGAGTTTGACTCCATCCCCCAAGACTTCTTCCATGGGCTTCAGAGTCTCGAGGTGTTGGCTTTGGATTACAACCACCTCAATGCCAGCTCCGGCGGCTGGCGCTTTCCTCCGACGTTGGAGTCCTCGGCGCAGCTGAGGAACTTGTCGTGCATGAGTTGCAACCTTGTGGGCCCCATTCCCGGGTTTCTCGGCGGCATGGCGTCGCTCTCGGTGGTTCAGCTCTCCGGCAACAACTTATCCGGCGAGATTCCGGCAACGCTGAGCGCGGCGGAGGCGTTGCAGGTTCTGTGGCTGAACAACCAGCGCGGCGGAGGGCTCACCGGGAGAATCGACGTGGTTGCGAGCATGGTTTCGTTGACGAGCTTGTGGCTTCACGGAAACAAGTTTTCGGGGACTGTTCCGGTGAACATTGGGGATTTGGTTTCGCTCAAGGATCTCGATCTCAACGGGAACGAGCTCGTGGGGCTAATCCCGCGTGGGTTGAGTGAAATGAAGCTGGACCGGTTGGATTTGAATAATAACCGTTTCATGGGTCCGATCCCTGAATTTGAAGCGGGTAAAGTGAGTTTTGGGTCGAATAGTTTTTGTTTGTCCAAGGTTGGGGTTATGTGTGCTTTTGAAGTGATGGCGCTGTTGGAGTTTCTTGCGGGGTTGGGTTATCCTCAGGTTTTGGTTGATTCGTGGAGTGGGAATGACCCGTGTGATGGGCCATGGTTGGGGGTAAAGTGCAATGGTGATGGAAAAGTGGAAATGATTGTCTTGGAAAAGTTTAATCTTAGTGGGAGTTTGAGTCCTTCTGTTGGGAAGTTGGATTCTCTTGTTGAAATAAGATTGGGAGGTAATGATATTAGTGGTGGGATTCCGAGTAATTGGACTAGTTTGAGATCTTTGACATTGTTGGATCTGAGTGGGAATAACATTTCCCTTCCCTTGCCGAGTTTTAGGAAAGGGTTGAAACTTGTGATTGATGGGAATCCTCTGTTAAGTGCCCCAGGTGTTGCTCTTTCTCCACCAGGGtctggttctggttctggttctggttctAGAAAGGGTGAAGGTGAATCTCCTTCAACTGATAAGCATAATCCTAATACAAATGAAGACTCTAGTCCCTTTCACAAGTCCAGTGTTTCTCTTGGGTCAAATAATTCCAAAGGGAGAAACTTGGTTCCGATTGTGGCTCCTATTGTAGGTGTTGCTGCTGTAGCTTTTCTGATTGTTCCTCTTTATGTGTACTGTTTCAGGAGGAGAAAGGGTGTGTCGGAGGGTGCAGGGTCGTTAGTGATTCACCCTAGAGATGCTTCTGATTCAGACAATGTGCTGAAGATTGTTGTTGCCAACAACGGCAATGGAGGTGTTTCCACGGTAACTGGAACTGGTTCCGGGGGTTCGAATGGAAGTGGGGATGCTCGTGTCATTGAGGCTGGGAACCTTGTGATATCGGTTCAAGTtcttcgaaaagtgaccaacaatttcgcgagggagaatgaggttggacgtggcgggtttggggttgtttacaagggagagttggaagatggaactaagattgcagtgaagagaatggaatctggtgtgattagcagcaaagcattggatgaattccaatctgagattgcagttctgtctaaagtccggcaccggcatttggtgtctcttttgggctattcagtcgaagggaatgagaggattctagtttatgagtatatgccacaaggggctcttagtatgcatcttttccattggaagagttttcagctagagccactctcttggaagaggaggctcaatattgccttggatgttgctagaggaatggagtatcttcatagtctagctcaccagatcttcattcacagagatctcaagtcatcaaatattttgcttggggatgactttagagcaaaagtctcagattttggattGGTTAAACTTGCTCCTGATGGCAAAAAATCTGTAGTCACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTTGGCGTGGTGCTAATGGAGTTGTTAACTGGATTAATGGCACTTGATGAGGATAGACCCGAGGAGAGCCAATACCTGGCGTCGTGGTTCTGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGATCCAGCCCTTGACATAAAGGAAGAAACGTTTGATAGCGTCTCCATAATTGCTGAGTTAGCTGGACACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTCATGCTGTAAATGTTCTTGGACCACTTGTTGAAAAATGGAAACCATTAGATGATGATACTGAGGAGTATTCGGGCATAGATTATAGTCTTCCCCTTAACCAAATGGTGAAGGGCTGGCAGGAGACAGAAGGAAAGGACTTGAGCTATGTGGACCTAGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTAATGGTTTTGCTGAGTCTTTTACTTCTGTTGATGGCCGGTGA 2958 0.407 MHLLTVDTQNGFSKRTVSLTHAMAHPLPFLLLCFFPLVLADTDPNDVKILNGFRRGLKNPELLPWPQEGGDPCGNGNGNAPWKYIFCNGNRVSQIQTKNLGLVGPLPPNLNELTMLENLGLQNNKLNGPLPSLNGLSNLRYAFLNFNEFDSIPQDFFHGLQSLEVLALDYNHLNASSGGWRFPPTLESSAQLRNLSCMSCNLVGPIPGFLGGMASLSVVQLSGNNLSGEIPATLSAAEALQVLWLNNQRGGGLTGRIDVVASMVSLTSLWLHGNKFSGTVPVNIGDLVSLKDLDLNGNELVGLIPRGLSEMKLDRLDLNNNRFMGPIPEFEAGKVSFGSNSFCLSKVGVMCAFEVMALLEFLAGLGYPQVLVDSWSGNDPCDGPWLGVKCNGDGKVEMIVLEKFNLSGSLSPSVGKLDSLVEIRLGGNDISGGIPSNWTSLRSLTLLDLSGNNISLPLPSFRKGLKLVIDGNPLLSAPGVALSPPGSGSGSGSGSRKGEGESPSTDKHNPNTNEDSSPFHKSSVSLGSNNSKGRNLVPIVAPIVGVAAVAFLIVPLYVYCFRRRKGVSEGAGSLVIHPRDASDSDNVLKIVVANNGNGGVSTVTGTGSGGSNGSGDARVIEAGNLVISVQVLRKVTNNFARENEVGRGGFGVVYKGELEDGTKIAVKRMESGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSFQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHIKSDKEKLMAAIDPALDIKEETFDSVSIIAELAGHCTAREPNQRPDMSHAVNVLGPLVEKWKPLDDDTEEYSGIDYSLPLNQMVKGWQETEGKDLSYVDLEDSKSSIPARPNGFAESFTSVDGR 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00639 985 Pfam Protein tyrosine and serine/threonine kinase 642 914 IPR001245 GO:0004672|GO:0006468
Cca02g00639 985 MobiDBLite consensus disorder prediction 479 529 - -
Cca02g00639 985 CDD STKc_IRAK 645 918 - -
Cca02g00639 985 Gene3D Phosphorylase Kinase; domain 1 609 716 - -
Cca02g00639 985 Gene3D Transferase(Phosphotransferase) domain 1 717 934 - -
Cca02g00639 985 SUPERFAMILY L domain-like 81 474 - -
Cca02g00639 985 MobiDBLite consensus disorder prediction 486 529 - -
Cca02g00639 985 Gene3D Ribonuclease Inhibitor 43 348 IPR032675 -
Cca02g00639 985 MobiDBLite consensus disorder prediction 964 985 - -
Cca02g00639 985 PANTHER OSJNBA0070M12.3 PROTEIN 29 985 - -
Cca02g00639 985 SUPERFAMILY Protein kinase-like (PK-like) 619 922 IPR011009 -
Cca02g00639 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Cca02g00639 985 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Cca02g00639 985 SMART LRR_typ_2 287 311 IPR003591 -
Cca02g00639 985 SMART LRR_typ_2 213 237 IPR003591 -
Cca02g00639 985 SMART LRR_typ_2 160 189 IPR003591 -
Cca02g00639 985 SMART LRR_typ_2 441 463 IPR003591 -
Cca02g00639 985 SMART LRR_typ_2 263 286 IPR003591 -
Cca02g00639 985 SMART LRR_typ_2 136 159 IPR003591 -
Cca02g00639 985 Pfam Leucine rich repeat N-terminal domain 356 391 IPR013210 -
Cca02g00639 985 Pfam Leucine rich repeat N-terminal domain 44 88 IPR013210 -
Cca02g00639 985 ProSiteProfiles Protein kinase domain profile. 639 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00639 985 Gene3D Ribonuclease Inhibitor 353 478 IPR032675 -
Cca02g00639 985 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 29 985 - -
Cca02g00639 985 SMART serkin_6 639 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00639 Cca-Chr2 14412496 14416857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00639 95 915 Receptor kinase-like Gene Family AT1G75820 30.289 3.13e-77 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca02g00639 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00639 - - gmx:100781857 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00639 02 14412496 14416857 Cca02g00639 02 14412496 14416857 ECH
Cca03g02583 03 47133788 47137319 Cca02g00639 02 14412496 14416857 PCT