Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g00638 | ATGGCGCACCCTCTCCCATTTCTCCTCCTATGTTTCTTCCCTCTTGTTCTCGCAGACACGGACCCTAACGACGTCAAGATTCTTAACGGCTTCAGAAGAGGTTTAAAGAACCCAGAGCTCTTACCGTGGCCCCAAGAAGGAGGAGACCCCTGCGGTAACGGTAACGGTAATGCTCCGTGGAAATATATCTTCTGCAACGGCAACCGAGTCTCCCAGATTCAGACCAAGAACCTGGGCCTGGTGGGCCCGCTCCCTCCCAACCTCAACGAGCTCACCATGCTCGAGAATTTGGGCCTCCAGAACAACAAGCTCAACGGGCCCTTACCTTCCCTCAACGGCTTATCAAACTTAAGATACGCGTTTCTCAACTTCAACGAGTTTGACTCCATCCCCCAAGACTTCTTCCATGGGCTTCAGAGTCTCGAGGTGTTGGCTTTGGATTACAACCACCTCAATGCCAGCTCCGGCGGCTGGCGCTTTCCTCCGACGTTGGAGTCCTCGGCGCAGCTGAGGAACTTGTCGTGCATGAGTTGCAACCTTGTGGGCCCCATTCCCGGGTTTCTCGGCGGCATGGCGTCGCTCTCGGTGGTTCAGCTCTCCGGCAACAACTTATCCGGCGAGATTCCGGCAACGCTGAGCGCGGCGGAGGCGTTGCAGGTTCTGTGGCTGAACAACCAGCGCGGCGGAGGGCTCACCGGGAGAATCGACGTGGTTGCGAGCATGGTTTCGTTGACGAGCTTGTGGCTTCACGGAAACAAGTTTTCGGGGACTGTTCCGGTGAACATTGGGGATTTGGTTTCGCTCAAGGATCTCGATCTCAACGGGAACGAGCTCGTGGGGCTAATCCCGCGTGGGTTGAGTGAAATGAAGCTGGACCGGTTGGATTTGAATAATAACCGTTTCATGGGTCCGATCCCTGAATTTGAAGCGGGTAAAGTGAGTTTTGGGTCGAATAGTTTTTGTTTGTCCAAGGTTGGGGTTATGTGTGCTTTTGAAGTGATGGCGCTGTTGGAGTTTCTTGCGGGGTTGGGTTATCCTCAGGTTTTGGTTGATTCGTGGAGTGGGAATGACCCGTGTGATGGGCCATGGTTGGGGGTAAAGTGCAATGGTGATGGAAAAGTGGAAATGATTGTCTTGGAAAAGTTTAATCTTAGTGGGAGTTTGAGTCCTTCTGTTGGGAAGTTGGATTCTCTTGTTGAAATAAGATTGGGAGGTAATGATATTAGTGGTGGGATTCCGAGTAATTGGACTAGTTTGAGATCTTTGACATTGTTGGATCTGAGTGGGAATAACATTTCCCTTCCCTTGCCGAGTTTTAGGAAAGGGTTGAAACTTGTGATTGATGGGAATCCTCTGTTAAGTGCCCCAGGTGTTGCTCTTTCTCCACCAGGGtctggttctggttctggttctggttctAGAAAGGGTGAAGGTGAATCTCCTTCAACTGATAAGCATAATCCTAATACAAATGAAGACTCTAGTCCCTTTCACAAGTCCAGTGTTTCTCTTGGGTCAAATAATTCCAAAGGGAGAAACTTGGTTCCGATTGTGGCTCCTATTGTAGGTGTTGCTGCTGTAGCTTTTCTGATTGTTCCTCTTTATGTGTACTGTTTCAGGAGGAGAAAGGGTGTGTCGGAGGGTGCAGGGTCGTTAGTGATTCACCCTAGAGATGCTTCTGATTCAGACAATGTGCTGAAGATTGTTGTTGCCAACAACGGCAATGGAGGTGTTTCCACGGTAACTGGAACTGGTTCCGGGGGTTCGAATGGAAGTGGGGATGCTCGTGTCATTGAGGCTGGGAACCTTGTGATATCGGTTCAAGTtcttcgaaaagtgaccaacaatttcgcgagggagaatgaggttggacgtggcgggtttggggttgtttacaagggagagttggaagatggaactaagattgcagtgaagagaatggaatctggtgtgattagcagcaaagcattggatgaattccaatctgagattgcagttctgtctaaagtccggcaccggcatttggtgtctcttttgggctattcagtcgaagggaatgagaggattctagtttatgagtatatgccacaaggggctcttagtatgcatcttttccattggaagagttttcagctagagccactctcttggaagaggaggctcaatattgccttggatgttgctagaggaatggagtatcttcatagtctagctcaccagatcttcattcacagagatctcaagtcatcaaatattttgcttggggatgactttagagcaaaagtctcagattttggattGGTTAAACTTGCTCCTGATGGCAAAAAATCTGTAGTCACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTTGGCGTGGTGCTAATGGAGTTGTTAACTGGATTAATGGCACTTGATGAGGATAGACCCGAGGAGAGCCAATACCTGGCGTCGTGGTTCTGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGATCCAGCCCTTGACATAAAGGAAGAAACGTTTGATAGCGTCTCCATAATTGCTGAGTTAGCTGGACACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTCATGCTGTAAATGTTCTTGGACCACTTGTTGAAAAATGGAAACCATTAGATGATGATACTGAGGAGTATTCGGGCATAGATTATAGTCTTCCCCTTAACCAAATGGTGAAGGGCTGGCAGGAGACAGAAGGAAAGGACTTGAGCTATGTGGACCTAGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTAATGGTTTTGCTGAGTCTTTTACTTCTGTTGATGGCCGGTGA | 2892 | 0.4049 | MAHPLPFLLLCFFPLVLADTDPNDVKILNGFRRGLKNPELLPWPQEGGDPCGNGNGNAPWKYIFCNGNRVSQIQTKNLGLVGPLPPNLNELTMLENLGLQNNKLNGPLPSLNGLSNLRYAFLNFNEFDSIPQDFFHGLQSLEVLALDYNHLNASSGGWRFPPTLESSAQLRNLSCMSCNLVGPIPGFLGGMASLSVVQLSGNNLSGEIPATLSAAEALQVLWLNNQRGGGLTGRIDVVASMVSLTSLWLHGNKFSGTVPVNIGDLVSLKDLDLNGNELVGLIPRGLSEMKLDRLDLNNNRFMGPIPEFEAGKVSFGSNSFCLSKVGVMCAFEVMALLEFLAGLGYPQVLVDSWSGNDPCDGPWLGVKCNGDGKVEMIVLEKFNLSGSLSPSVGKLDSLVEIRLGGNDISGGIPSNWTSLRSLTLLDLSGNNISLPLPSFRKGLKLVIDGNPLLSAPGVALSPPGSGSGSGSGSRKGEGESPSTDKHNPNTNEDSSPFHKSSVSLGSNNSKGRNLVPIVAPIVGVAAVAFLIVPLYVYCFRRRKGVSEGAGSLVIHPRDASDSDNVLKIVVANNGNGGVSTVTGTGSGGSNGSGDARVIEAGNLVISVQVLRKVTNNFARENEVGRGGFGVVYKGELEDGTKIAVKRMESGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSFQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHIKSDKEKLMAAIDPALDIKEETFDSVSIIAELAGHCTAREPNQRPDMSHAVNVLGPLVEKWKPLDDDTEEYSGIDYSLPLNQMVKGWQETEGKDLSYVDLEDSKSSIPARPNGFAESFTSVDGR | 963 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g00638 | 963 | ProSiteProfiles | Protein kinase domain profile. | 617 | 897 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g00638 | 963 | Gene3D | Ribonuclease Inhibitor | 21 | 326 | IPR032675 | - | |
Cca02g00638 | 963 | Gene3D | Transferase(Phosphotransferase) domain 1 | 695 | 912 | - | - | |
Cca02g00638 | 963 | MobiDBLite | consensus disorder prediction | 457 | 507 | - | - | |
Cca02g00638 | 963 | SMART | serkin_6 | 617 | 897 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca02g00638 | 963 | MobiDBLite | consensus disorder prediction | 942 | 963 | - | - | |
Cca02g00638 | 963 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 742 | 754 | IPR008271 | GO:0004672|GO:0006468 | |
Cca02g00638 | 963 | SUPERFAMILY | L domain-like | 59 | 452 | - | - | |
Cca02g00638 | 963 | Gene3D | Ribonuclease Inhibitor | 331 | 456 | IPR032675 | - | |
Cca02g00638 | 963 | SUPERFAMILY | Protein kinase-like (PK-like) | 597 | 900 | IPR011009 | - | |
Cca02g00638 | 963 | PANTHER | OSJNBA0070M12.3 PROTEIN | 8 | 963 | - | - | |
Cca02g00638 | 963 | MobiDBLite | consensus disorder prediction | 464 | 507 | - | - | |
Cca02g00638 | 963 | Gene3D | Phosphorylase Kinase; domain 1 | 587 | 694 | - | - | |
Cca02g00638 | 963 | PANTHER | RECEPTOR PROTEIN KINASE TMK1-LIKE | 8 | 963 | - | - | |
Cca02g00638 | 963 | Pfam | Leucine rich repeat N-terminal domain | 334 | 369 | IPR013210 | - | |
Cca02g00638 | 963 | Pfam | Leucine rich repeat N-terminal domain | 22 | 66 | IPR013210 | - | |
Cca02g00638 | 963 | CDD | STKc_IRAK | 623 | 896 | - | - | |
Cca02g00638 | 963 | Pfam | Protein tyrosine and serine/threonine kinase | 620 | 892 | IPR001245 | GO:0004672|GO:0006468 | |
Cca02g00638 | 963 | ProSitePatterns | Protein kinases ATP-binding region signature. | 623 | 645 | IPR017441 | GO:0005524 | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 114 | 137 | IPR003591 | - | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 265 | 289 | IPR003591 | - | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 241 | 264 | IPR003591 | - | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 419 | 441 | IPR003591 | - | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 138 | 167 | IPR003591 | - | |
Cca02g00638 | 963 | SMART | LRR_typ_2 | 191 | 215 | IPR003591 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g00638 | Cca-Chr2 | 14400243 | 14403769 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g00638 | 73 | 893 | Receptor kinase-like Gene Family | AT1G75820 | 30.289 | 3.02e-77 | 271 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-IX | Cca02g00638 | PK_Tyr_Ser-Thr | 2.4e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g00638 | - | - | gmx:100781857 | 1550.8 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g00638 | 02 | 14400243 | 14403769 | Cca02g00638 | 02 | 14400243 | 14403769 | ECH |