Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00638 ATGGCGCACCCTCTCCCATTTCTCCTCCTATGTTTCTTCCCTCTTGTTCTCGCAGACACGGACCCTAACGACGTCAAGATTCTTAACGGCTTCAGAAGAGGTTTAAAGAACCCAGAGCTCTTACCGTGGCCCCAAGAAGGAGGAGACCCCTGCGGTAACGGTAACGGTAATGCTCCGTGGAAATATATCTTCTGCAACGGCAACCGAGTCTCCCAGATTCAGACCAAGAACCTGGGCCTGGTGGGCCCGCTCCCTCCCAACCTCAACGAGCTCACCATGCTCGAGAATTTGGGCCTCCAGAACAACAAGCTCAACGGGCCCTTACCTTCCCTCAACGGCTTATCAAACTTAAGATACGCGTTTCTCAACTTCAACGAGTTTGACTCCATCCCCCAAGACTTCTTCCATGGGCTTCAGAGTCTCGAGGTGTTGGCTTTGGATTACAACCACCTCAATGCCAGCTCCGGCGGCTGGCGCTTTCCTCCGACGTTGGAGTCCTCGGCGCAGCTGAGGAACTTGTCGTGCATGAGTTGCAACCTTGTGGGCCCCATTCCCGGGTTTCTCGGCGGCATGGCGTCGCTCTCGGTGGTTCAGCTCTCCGGCAACAACTTATCCGGCGAGATTCCGGCAACGCTGAGCGCGGCGGAGGCGTTGCAGGTTCTGTGGCTGAACAACCAGCGCGGCGGAGGGCTCACCGGGAGAATCGACGTGGTTGCGAGCATGGTTTCGTTGACGAGCTTGTGGCTTCACGGAAACAAGTTTTCGGGGACTGTTCCGGTGAACATTGGGGATTTGGTTTCGCTCAAGGATCTCGATCTCAACGGGAACGAGCTCGTGGGGCTAATCCCGCGTGGGTTGAGTGAAATGAAGCTGGACCGGTTGGATTTGAATAATAACCGTTTCATGGGTCCGATCCCTGAATTTGAAGCGGGTAAAGTGAGTTTTGGGTCGAATAGTTTTTGTTTGTCCAAGGTTGGGGTTATGTGTGCTTTTGAAGTGATGGCGCTGTTGGAGTTTCTTGCGGGGTTGGGTTATCCTCAGGTTTTGGTTGATTCGTGGAGTGGGAATGACCCGTGTGATGGGCCATGGTTGGGGGTAAAGTGCAATGGTGATGGAAAAGTGGAAATGATTGTCTTGGAAAAGTTTAATCTTAGTGGGAGTTTGAGTCCTTCTGTTGGGAAGTTGGATTCTCTTGTTGAAATAAGATTGGGAGGTAATGATATTAGTGGTGGGATTCCGAGTAATTGGACTAGTTTGAGATCTTTGACATTGTTGGATCTGAGTGGGAATAACATTTCCCTTCCCTTGCCGAGTTTTAGGAAAGGGTTGAAACTTGTGATTGATGGGAATCCTCTGTTAAGTGCCCCAGGTGTTGCTCTTTCTCCACCAGGGtctggttctggttctggttctggttctAGAAAGGGTGAAGGTGAATCTCCTTCAACTGATAAGCATAATCCTAATACAAATGAAGACTCTAGTCCCTTTCACAAGTCCAGTGTTTCTCTTGGGTCAAATAATTCCAAAGGGAGAAACTTGGTTCCGATTGTGGCTCCTATTGTAGGTGTTGCTGCTGTAGCTTTTCTGATTGTTCCTCTTTATGTGTACTGTTTCAGGAGGAGAAAGGGTGTGTCGGAGGGTGCAGGGTCGTTAGTGATTCACCCTAGAGATGCTTCTGATTCAGACAATGTGCTGAAGATTGTTGTTGCCAACAACGGCAATGGAGGTGTTTCCACGGTAACTGGAACTGGTTCCGGGGGTTCGAATGGAAGTGGGGATGCTCGTGTCATTGAGGCTGGGAACCTTGTGATATCGGTTCAAGTtcttcgaaaagtgaccaacaatttcgcgagggagaatgaggttggacgtggcgggtttggggttgtttacaagggagagttggaagatggaactaagattgcagtgaagagaatggaatctggtgtgattagcagcaaagcattggatgaattccaatctgagattgcagttctgtctaaagtccggcaccggcatttggtgtctcttttgggctattcagtcgaagggaatgagaggattctagtttatgagtatatgccacaaggggctcttagtatgcatcttttccattggaagagttttcagctagagccactctcttggaagaggaggctcaatattgccttggatgttgctagaggaatggagtatcttcatagtctagctcaccagatcttcattcacagagatctcaagtcatcaaatattttgcttggggatgactttagagcaaaagtctcagattttggattGGTTAAACTTGCTCCTGATGGCAAAAAATCTGTAGTCACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTTGGCGTGGTGCTAATGGAGTTGTTAACTGGATTAATGGCACTTGATGAGGATAGACCCGAGGAGAGCCAATACCTGGCGTCGTGGTTCTGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGATCCAGCCCTTGACATAAAGGAAGAAACGTTTGATAGCGTCTCCATAATTGCTGAGTTAGCTGGACACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTCATGCTGTAAATGTTCTTGGACCACTTGTTGAAAAATGGAAACCATTAGATGATGATACTGAGGAGTATTCGGGCATAGATTATAGTCTTCCCCTTAACCAAATGGTGAAGGGCTGGCAGGAGACAGAAGGAAAGGACTTGAGCTATGTGGACCTAGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTAATGGTTTTGCTGAGTCTTTTACTTCTGTTGATGGCCGGTGA 2892 0.4049 MAHPLPFLLLCFFPLVLADTDPNDVKILNGFRRGLKNPELLPWPQEGGDPCGNGNGNAPWKYIFCNGNRVSQIQTKNLGLVGPLPPNLNELTMLENLGLQNNKLNGPLPSLNGLSNLRYAFLNFNEFDSIPQDFFHGLQSLEVLALDYNHLNASSGGWRFPPTLESSAQLRNLSCMSCNLVGPIPGFLGGMASLSVVQLSGNNLSGEIPATLSAAEALQVLWLNNQRGGGLTGRIDVVASMVSLTSLWLHGNKFSGTVPVNIGDLVSLKDLDLNGNELVGLIPRGLSEMKLDRLDLNNNRFMGPIPEFEAGKVSFGSNSFCLSKVGVMCAFEVMALLEFLAGLGYPQVLVDSWSGNDPCDGPWLGVKCNGDGKVEMIVLEKFNLSGSLSPSVGKLDSLVEIRLGGNDISGGIPSNWTSLRSLTLLDLSGNNISLPLPSFRKGLKLVIDGNPLLSAPGVALSPPGSGSGSGSGSRKGEGESPSTDKHNPNTNEDSSPFHKSSVSLGSNNSKGRNLVPIVAPIVGVAAVAFLIVPLYVYCFRRRKGVSEGAGSLVIHPRDASDSDNVLKIVVANNGNGGVSTVTGTGSGGSNGSGDARVIEAGNLVISVQVLRKVTNNFARENEVGRGGFGVVYKGELEDGTKIAVKRMESGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSFQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLASWFWHIKSDKEKLMAAIDPALDIKEETFDSVSIIAELAGHCTAREPNQRPDMSHAVNVLGPLVEKWKPLDDDTEEYSGIDYSLPLNQMVKGWQETEGKDLSYVDLEDSKSSIPARPNGFAESFTSVDGR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00638 963 ProSiteProfiles Protein kinase domain profile. 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00638 963 Gene3D Ribonuclease Inhibitor 21 326 IPR032675 -
Cca02g00638 963 Gene3D Transferase(Phosphotransferase) domain 1 695 912 - -
Cca02g00638 963 MobiDBLite consensus disorder prediction 457 507 - -
Cca02g00638 963 SMART serkin_6 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00638 963 MobiDBLite consensus disorder prediction 942 963 - -
Cca02g00638 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Cca02g00638 963 SUPERFAMILY L domain-like 59 452 - -
Cca02g00638 963 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Cca02g00638 963 SUPERFAMILY Protein kinase-like (PK-like) 597 900 IPR011009 -
Cca02g00638 963 PANTHER OSJNBA0070M12.3 PROTEIN 8 963 - -
Cca02g00638 963 MobiDBLite consensus disorder prediction 464 507 - -
Cca02g00638 963 Gene3D Phosphorylase Kinase; domain 1 587 694 - -
Cca02g00638 963 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 8 963 - -
Cca02g00638 963 Pfam Leucine rich repeat N-terminal domain 334 369 IPR013210 -
Cca02g00638 963 Pfam Leucine rich repeat N-terminal domain 22 66 IPR013210 -
Cca02g00638 963 CDD STKc_IRAK 623 896 - -
Cca02g00638 963 Pfam Protein tyrosine and serine/threonine kinase 620 892 IPR001245 GO:0004672|GO:0006468
Cca02g00638 963 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Cca02g00638 963 SMART LRR_typ_2 114 137 IPR003591 -
Cca02g00638 963 SMART LRR_typ_2 265 289 IPR003591 -
Cca02g00638 963 SMART LRR_typ_2 241 264 IPR003591 -
Cca02g00638 963 SMART LRR_typ_2 419 441 IPR003591 -
Cca02g00638 963 SMART LRR_typ_2 138 167 IPR003591 -
Cca02g00638 963 SMART LRR_typ_2 191 215 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00638 Cca-Chr2 14400243 14403769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00638 73 893 Receptor kinase-like Gene Family AT1G75820 30.289 3.02e-77 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca02g00638 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00638 - - gmx:100781857 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00638 02 14400243 14403769 Cca02g00638 02 14400243 14403769 ECH