Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00625 ATGTCCCACCTAAACGGCTCATACTACGGCCCCGCCATACCGCCGCCGCGGAAGTCGTACCgccgcggcggaggcggcggcgggggcCTGAGCTGCTGCTGCGGGTGCATCTTCGACTGCATCCTCGGCATCATCTGCAAGATCCTCACGACAATCATCGTCATCGTGGTAATCGTGGGACTCCTCTTCTGGCTCATCGTACGCCCCAACGTGCTGAAGTTCCACGTCACTGACGCCGCACTCAATCAATTCTCGTACGCCAACAACACCTTACGGTACGACCTCGCTCTCAACATCTCGGTCCGCAACCCGAACCgcagggtcgggggggggggcggcggcgggtgcCTGAGCTGCTGCTGCGGGTGCATCTTCGACTGCATCCTCGGCATCATCTGCAAGATCCTCACGACAATCATCGTCATCGTGGTAATCGTGGGACTCCTCTTCTGGCTCATCGTACGCCCCAACGTGCTGAAGTTCCACGTCACTGACGCCGCACTCAATCAATTCTCGTACGCCAACAACACCTTACGGTACGACCTCGCTCTCAACATCTCGGTCCGCAACCCGAACCGCAGGGTCGGGATCTACTACGACAGCGTGGAGGCGGTGGCGCTGTACCAGGATGTCCGGTTCGCGTCCCGAACCTTGGAGCCGTTCTTTCAGCACAGCAAGAACACGACTTTGTTGAGCCCCGTTTTCAAGGGACAGCGCGTGGCGCCACTCTCGGCCGAACAGGGTTCGAAGCTGGAGGAGGAGAAGGGTTCGGGGGTTTACTCGATCGACGCGAAGCTGTTCATGACGGTTCGGTTCAAGTTCTGGTGGTTCAAGATGGGGAGCGTCAAGCCCAAGATTCGGTGTGACTTGCACGTGCCGCTCAAGTCCAGTAATGGGACCCATCACGACGCTGCGTTTCGGGACACGGAGTGCGGCTGGGATTACAAACGCTGGTGGTGGTTCCATTAG 969 0.5418 MSHLNGSYYGPAIPPPRKSYRRGGGGGGGLSCCCGCIFDCILGIICKILTTIIVIVVIVGLLFWLIVRPNVLKFHVTDAALNQFSYANNTLRYDLALNISVRNPNRRVGGGGGGGCLSCCCGCIFDCILGIICKILTTIIVIVVIVGLLFWLIVRPNVLKFHVTDAALNQFSYANNTLRYDLALNISVRNPNRRVGIYYDSVEAVALYQDVRFASRTLEPFFQHSKNTTLLSPVFKGQRVAPLSAEQGSKLEEEKGSGVYSIDAKLFMTVRFKFWWFKMGSVKPKIRCDLHVPLKSSNGTHHDAAFRDTECGWDYKRWWWFH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00625 322 Pfam Late embryogenesis abundant protein 185 286 IPR004864 -
Cca02g00625 322 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 27 109 - -
Cca02g00625 322 PANTHER OS05G0367900 PROTEIN 27 109 IPR044839 GO:0098542
Cca02g00625 322 PANTHER OS05G0367900 PROTEIN 115 315 IPR044839 GO:0098542
Cca02g00625 322 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 115 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00625 Cca-Chr2 13968068 13969036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00625 153 300 SNARE and Associated Proteins AT1G32270 39.735 2.54e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00625 - - gmx:100814808 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02574 03 47045399 47048120 Cca02g00625 02 13968068 13969036 PCT